Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g2029 ATGCTTAACTCCGATGAAGCAGATATTGATATATTCTTCGACTCAGCAGATTTTCTGCCACCTCAACACTCTGTTTTAGGGGAAGAGTTGGGCCGTAACAGGTTCTTCGGGTATGAAGTCTGGGTGAATGAGCCTCGGAGTGTGACGGAAAGACGGCAACGTTTTCTCCAGGAAATGGGTTTTGCTAAATTTTCTTCAAGCATTTGCTCTCAAGAGAATAACAACGCCTTGGAACTCGAAAGAATAATGGAGAGCGAAGGCGCTGTATCAAGTGCCTTCAGTTCCTCCTCCGAAGCCAACTTCTTGTTTGATGAACAAAACGGAGACGTAAACTTTGAAAGGAATGTGTGTGAGTCATCTTCAGGTGAAGAGCACAGACCCGGAGAAGCTGAGGCACCAGAAGAATATCAATACGGTCCCTTTGATATGAGTAAAAAGAAAATGAAGGGGTGGTGGAAGCTCTTTGCGGAGAGCAGGAAAACAATAGGGGGAAAAGTGCGATCAAAATTGCATAGAGAGACCAGAAAGACTCGCAGAATAAAAGTAAAGCAGAACAAAAAGAGGTGGATGGAATTGAGTGCCTTGTACTTGGGACAAGAGATTAGAGCTCATGAAGGCGTAATATGGAATATGAAGTTTAGTCCCAATGGCCATTATCTAGCCAGTGGAGGTGAAGATGGGGTAGTACGCGTGTGGCGTGTTATGTCAATGGATACATCCTGCATTTTCTTTAATGCAAAAGACACTACTCCCACTAACAAAGGGAAACAAGAAATCTCTTGTTCTCGGAGGAAACAGCCAAATATATCCTTCCTGGCCCTTCCAAACAAGGTTCTTCAAATAGAGGAATCACCACTGCAAGAGTTCTTTGGTCATGCCAGTGATGTCTTAGATTTGGCTTGGTTTGATTCAAATATTCTTCTGTCATCTTCGATGGACAAAACGGTTCGTTTGTGGCAAATTGGTTGTGATCAATGCCTGGGTGTCTTCCGTCACAATGATTATGTGACTTGTATTCAAGTCAACCCGGTTGATAAAAACTATTTTATCAGTGGGTCTATAGATGGCAAAGTCCGAATATGGGGGTTGTGTGAAGAGCGAGTTGTTGATTGGGCAGATGTACGAGATGTGATTACAGCTATAAGTTACCAGCCAGATGGGAAGGGGTTTGTAGTTGGATCCATCTCAGGCGCTTGTCGTTTTTATGCTGCTTCAGGCAAACATTTCCAGCTTGAGGCAGAGATATGGGTTCATGGGAAAAAAAGATCAGCTGGGAACAAGATTACTGGTATTCAGTTTTCACAGAAAAAACACCAGAGAATCATGATCACATCAGAAGATTCTAAAATTCGTGTACTGGATGGCTTTGAACTTGTCCAGAAATTTAGAGGCATTGTGAAGTCAGGAAGCCAGATATCTGGCTCGTTTACATCAAGTGAAAATCATATCATTTCTGTCGGAGAGGACTCCCACGTGTACATATGGAACTGCAATGACTTGTTAAATCCAACATCCAGACCCCCAAAATCTGAGCGTTGCTGTGAGTACTTTTCCACTGAAGGTGTTACTGTGGCACTACCCTGGTCAGTAAATAGCACAGAACAAACAAGCTCGGTTGGTAATTCAGAAATGCGACATCTCCAAGAGGCTCGTCCCAGCGTTAGAGATTCAAAGCGTTTTTCTCTTGGTAATTGGTTCACCATGGAAGGGACATGCCAGGGTGCAGTGACGTGGCCGGAGGAGAAACTTCCGAGTTGGAATTTACCATTTGCAGAAGATGAATATGATCCCACGGAACTGTGCCCAAAAGATGCTTGGCATTCAGAAACATGGGGCCTCTCTTTTGTGGTAGCTGGTTTAGATGGAACTATCAAGACATTCCATAACTTTGGATTGCCTGTCAGGCTTTAG 1911 0.4369 MLNSDEADIDIFFDSADFLPPQHSVLGEELGRNRFFGYEVWVNEPRSVTERRQRFLQEMGFAKFSSSICSQENNNALELERIMESEGAVSSAFSSSSEANFLFDEQNGDVNFERNVCESSSGEEHRPGEAEAPEEYQYGPFDMSKKKMKGWWKLFAESRKTIGGKVRSKLHRETRKTRRIKVKQNKKRWMELSALYLGQEIRAHEGVIWNMKFSPNGHYLASGGEDGVVRVWRVMSMDTSCIFFNAKDTTPTNKGKQEISCSRRKQPNISFLALPNKVLQIEESPLQEFFGHASDVLDLAWFDSNILLSSSMDKTVRLWQIGCDQCLGVFRHNDYVTCIQVNPVDKNYFISGSIDGKVRIWGLCEERVVDWADVRDVITAISYQPDGKGFVVGSISGACRFYAASGKHFQLEAEIWVHGKKRSAGNKITGIQFSQKKHQRIMITSEDSKIRVLDGFELVQKFRGIVKSGSQISGSFTSSENHIISVGEDSHVYIWNCNDLLNPTSRPPKSERCCEYFSTEGVTVALPWSVNSTEQTSSVGNSEMRHLQEARPSVRDSKRFSLGNWFTMEGTCQGAVTWPEEKLPSWNLPFAEDEYDPTELCPKDAWHSETWGLSFVVAGLDGTIKTFHNFGLPVRL 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g2029 636 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 201 234 - -
Prci9g2029 636 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 329 363 - -
Prci9g2029 636 SUPERFAMILY WD40 repeat-like 196 625 IPR036322 GO:0005515
Prci9g2029 636 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 289 321 - -
Prci9g2029 636 PANTHER WD REPEAT DOMAIN 44 139 633 IPR040324 -
Prci9g2029 636 PRINTS G protein beta WD-40 repeat signature 220 234 IPR020472 -
Prci9g2029 636 PRINTS G protein beta WD-40 repeat signature 349 363 IPR020472 -
Prci9g2029 636 PRINTS G protein beta WD-40 repeat signature 307 321 IPR020472 -
Prci9g2029 636 Pfam WD domain, G-beta repeat 325 361 IPR001680 GO:0005515
Prci9g2029 636 Pfam WD domain, G-beta repeat 284 319 IPR001680 GO:0005515
Prci9g2029 636 Pfam WD domain, G-beta repeat 200 232 IPR001680 GO:0005515
Prci9g2029 636 Gene3D - 187 530 IPR015943 GO:0005515
Prci9g2029 636 ProSiteProfiles Trp-Asp (WD) repeats profile. 289 321 IPR001680 GO:0005515
Prci9g2029 636 ProSiteProfiles Trp-Asp (WD) repeats profile. 329 363 IPR001680 GO:0005515
Prci9g2029 636 SMART WD40_4 194 233 IPR001680 GO:0005515
Prci9g2029 636 SMART WD40_4 408 454 IPR001680 GO:0005515
Prci9g2029 636 SMART WD40_4 364 403 IPR001680 GO:0005515
Prci9g2029 636 SMART WD40_4 455 496 IPR001680 GO:0005515
Prci9g2029 636 SMART WD40_4 323 362 IPR001680 GO:0005515
Prci9g2029 636 SMART WD40_4 282 320 IPR001680 GO:0005515
Prci9g2029 636 ProSiteProfiles Trp-Asp (WD) repeats profile. 201 234 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g2029 Prci-Chr9 31051885 31055957 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g2029 286 493 U-box Gene Family AT2G33340 25.000 4.15e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g2029 K20241 - gmx:100801576 766.918