Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g2018 ATGAGTGGGAGTGGTAGAAGGCGTTCCTCAAAGTGGGATTTAAGAGATGAACCTGAGTTTGTATCTGACAGTAAGCAATTGCGATCTGGGTGGTCCTCTGCCAATGTTACTGGTAGCAATAGTTCAAAGTGGTCTTATCTGGAAGGGAATGAGAAGCTAAAACCTAATATGCGATTACCATACAAAGAACCTTTTTCTGGAGGCAGAGTTTCTAATAAGGATGATATCATGAATAAAGACTATAACAGAGATTTGGATGCCAAAATGGCATGGGACGCAGATGAGAGCTATGGAATGAAAATGTCTCCAGGGTTGGAGGAGTGGAAACGTAAGAGGCGCAGTCATTCCCCAAAAAATGGTTTGGACAGGTCAGTCAGGAGCAGGAGCCGGAGCCGGAGCCGGAGCCCTGCCCTTGGGTTTAGGTGGGAATCAGGAGTCAATGACAGAAATAGAATGAGAGATGGAGGATTGCCGCAACCATGTAGAGATTTTGCTGTTGGAAAATGCAGAAGAGGCAGCCGTTGCCATTTTCTTCACCATGACAATCGAAATTATGAGGATGGCTGGGACAGGAGAAACAGGAAAGATGGACCTCCTAGATATTCTGCTCCCTATGAAAGCAGGGACATTTCTGCTAGGAGTGGAAGATCAAGTGAGACCTGTATCAATTTTGCACAAGGGAAATGTAGAATGGGAGCATCTTGCAAGTCTGTGCATCATAGCAATTCTGATGATATGAGCAAAGGAAATGTAGATGAATCAACTAGAGAGAGGGAATTTGATCAAAGGCGTAGGGAGAGTTCTTTCGAGCGTAGTGGTGGGCATGAGCCAAACCGCTTTAGTGGTACTCCCTGCAAATTTTATGCAGCAGGCAATTGTCGCAATGGTAAACATTGCAGGTTTTCTCATGATAGGCAGGCATCTAGGAGTCCAAATAGAAGATTAAGAGATGACAGGTGGGGGGACAATCCAGGTGGAGATCAGGCATTGGATAGAACAAGAGGGAGTAACTCAGTTAGTCCTGGTAGAAGGCTAAGAGATGATAGATGGGGTCCAGATATGGTTGACGTGGATAAAATGTGGGATGGTCCACAACTGAATGATGCTGTTGCTGTCCCAGATACAGCAAAGCTGGGTGAAGACAAGAGTGGAAATATGGGCATACCAGATCCTGGATTCACTACTTGGCCCAGGACTGATGGATGGGGCGATAATTTAGATAACAACAAAGTGTATGCGGAGCCACCTTTTGTGGGTGACAAGAAGAAAGTAGAACAATGGAAGACAGAAAATGCTGGTACTACCATGGGTGCTCCCCAATCAATTGTGACTGACAAATGGCTTGATGATGCAGAAATGTCTCCTGATTGGAATTATGGGAGTGGATCTTCTGGGCACATTGAAGACAAGAGTGGACAGAAAAAGCAAGGTTTGACCCAGGGTGGTGCATATTTAGCCACCTCCGAACATAGTAGATTACAAGTTGCTCCAGGACAAGGTTTCAATCAGAACACACAGAATGTAAATGCTTTGCATCCTTCTAGTTGTAATGTTGTTGGACAAAGTCAAGGGGCAGTCCCTGTTGCTCCTCCACTTGGAGGGTTAGTTGAAGTTATTCAGAACCAAGCATCTTCTGTAAAAAAGTTTAGTGTTGAACCAAACATCATGGATGCAAGCTTATCGCATGTTAGTACAATAAACAATCCAACTCAAAACATGGTGAGCAATGAACAGCTTGCTCATCTTAACAGCCTCTCAGCCTCTCTGGTTCATTTCCTGGGAACAGGTCAGCAACTTCCACAAATTTATGCTGCACTAAATTCTCATGATGCAAAGGACACATCCTCCCTACCCAAAACCAAAACTGAAGTGTCTGGGGAGCCTGTTTCCAGTGCATGCATCAAGCCTGATCCTGTTATTGGATCCCGGAAGCTGTATGATCCAATGAATGATGGTATGGAGCCAAAGAAAACTGATGCAGGTGGAATCACGCCATCCTTTTCTCCCAGTAAAACAATTGCCGATGGTTCAGGGAAACAAAATCATGGTGATTCTTATAAGACTTCAGAAGCACAAATTGTCAAGAGTGAACATTTAATGCCGTTGCAGCCAGGTCAAAAAGCTGAAGCTAATGAGGGAAACAATGACGTGGCAGCTGAGGAAAGGCAAGATTCTCGAGCGGAAGATAGAAATGCAAAAGATAATGGCCCTTCAGAAAATATGGACCAAAATGGGCCTGATGAGGCGAAAAAAATGAAGGATGTGAAAGGGATTCGTGCTTTTAAATTTGCGCTGGTTGAGTTTGTTAAGGAGCTTCTGAAACCAACATGGAAAGAAGGTCATATCAACAAAGAACATTATAAAACAATTGTGAAGAAAGTTGTTGATAAAGTAACCGGTACTATGCAGGGGGCTCATATCCCTCAGACACAAGAAAAAATTGATCACTATCTGTCAGTTTCGAAACCAAAGCTTAACAAACTTGTACAGGCATATGTTGAAAAGGTTCAGAAGGCTTAG 2520 0.4377 MSGSGRRRSSKWDLRDEPEFVSDSKQLRSGWSSANVTGSNSSKWSYLEGNEKLKPNMRLPYKEPFSGGRVSNKDDIMNKDYNRDLDAKMAWDADESYGMKMSPGLEEWKRKRRSHSPKNGLDRSVRSRSRSRSRSPALGFRWESGVNDRNRMRDGGLPQPCRDFAVGKCRRGSRCHFLHHDNRNYEDGWDRRNRKDGPPRYSAPYESRDISARSGRSSETCINFAQGKCRMGASCKSVHHSNSDDMSKGNVDESTREREFDQRRRESSFERSGGHEPNRFSGTPCKFYAAGNCRNGKHCRFSHDRQASRSPNRRLRDDRWGDNPGGDQALDRTRGSNSVSPGRRLRDDRWGPDMVDVDKMWDGPQLNDAVAVPDTAKLGEDKSGNMGIPDPGFTTWPRTDGWGDNLDNNKVYAEPPFVGDKKKVEQWKTENAGTTMGAPQSIVTDKWLDDAEMSPDWNYGSGSSGHIEDKSGQKKQGLTQGGAYLATSEHSRLQVAPGQGFNQNTQNVNALHPSSCNVVGQSQGAVPVAPPLGGLVEVIQNQASSVKKFSVEPNIMDASLSHVSTINNPTQNMVSNEQLAHLNSLSASLVHFLGTGQQLPQIYAALNSHDAKDTSSLPKTKTEVSGEPVSSACIKPDPVIGSRKLYDPMNDGMEPKKTDAGGITPSFSPSKTIADGSGKQNHGDSYKTSEAQIVKSEHLMPLQPGQKAEANEGNNDVAAEERQDSRAEDRNAKDNGPSENMDQNGPDEAKKMKDVKGIRAFKFALVEFVKELLKPTWKEGHINKEHYKTIVKKVVDKVTGTMQGAHIPQTQEKIDHYLSVSKPKLNKLVQAYVEKVQKA 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g2018 839 Gene3D - 277 342 - -
Prci9g2018 839 SUPERFAMILY CCCH zinc finger 283 304 IPR036855 GO:0046872
Prci9g2018 839 MobiDBLite consensus disorder prediction 186 202 - -
Prci9g2018 839 MobiDBLite consensus disorder prediction 57 76 - -
Prci9g2018 839 MobiDBLite consensus disorder prediction 186 212 - -
Prci9g2018 839 MobiDBLite consensus disorder prediction 299 352 - -
Prci9g2018 839 MobiDBLite consensus disorder prediction 104 129 - -
Prci9g2018 839 MobiDBLite consensus disorder prediction 610 749 - -
Prci9g2018 839 MobiDBLite consensus disorder prediction 8 23 - -
Prci9g2018 839 MobiDBLite consensus disorder prediction 241 273 - -
Prci9g2018 839 ProSiteProfiles Zinc finger C3H1-type profile. 155 182 IPR000571 GO:0046872
Prci9g2018 839 MobiDBLite consensus disorder prediction 610 627 - -
Prci9g2018 839 MobiDBLite consensus disorder prediction 25 46 - -
Prci9g2018 839 MobiDBLite consensus disorder prediction 714 736 - -
Prci9g2018 839 MobiDBLite consensus disorder prediction 299 325 - -
Prci9g2018 839 Pfam CCCH-type zinc finger 284 304 IPR041367 -
Prci9g2018 839 SMART c3hfinal6 157 181 IPR000571 GO:0046872
Prci9g2018 839 SMART c3hfinal6 279 305 IPR000571 GO:0046872
Prci9g2018 839 SMART c3hfinal6 216 241 IPR000571 GO:0046872
Prci9g2018 839 MobiDBLite consensus disorder prediction 96 143 - -
Prci9g2018 839 MobiDBLite consensus disorder prediction 1 46 - -
Prci9g2018 839 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 160 180 IPR000571 GO:0046872
Prci9g2018 839 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1 838 - -
Prci9g2018 839 MobiDBLite consensus disorder prediction 663 692 - -
Prci9g2018 839 ProSiteProfiles Zinc finger C3H1-type profile. 215 242 IPR000571 GO:0046872
Prci9g2018 839 Gene3D - 158 243 - -
Prci9g2018 839 MobiDBLite consensus disorder prediction 454 480 - -
Prci9g2018 839 MobiDBLite consensus disorder prediction 235 281 - -
Prci9g2018 839 ProSiteProfiles Zinc finger C3H1-type profile. 279 306 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g2018 Prci-Chr9 30995686 31004242 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Prci9g2018 zf-CCCH_4 8.3e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g2018 - K22909 gmx:100783856 985.711