Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g2017 ATGAGTGGGAGTGGTAGAAGGCGTTCCTCAAAGTGGGATTTAAGAGATGAACCTGAGTTTGTATCTGACAGTAAGCAATTGCGATCTGGGTGGTCCTCTGCCAATGTTACTGGTAGCAATAGTTCAAAGTGGTCTTATCTGGAAGGGAATGAGAAGCTAAAACCTAATATGCGATTACCATACAAAGAACCTTTTTCTGGAGGCAGAGTTTCTAATAAGGATGATATCATGAATAAAGACTATAACAGAGATTTGGATGCCAAAATGGCATGGGACGCAGATGAGAGCTATGGAATGAAAATGTCTCCAGGGTTGGAGGAGTGGAAACGTAAGAGGCGCAGTCATTCCCCAAAAAATGGTTTGGACAGGAGCAGGAGCCGGAGCCGGAGCCGGAGCCCTGCCCTTGGGTTTAGGTGGGAATCAGGAGTCAATGACAGAAATAGAATGAGAGATGGAGGATTGCCGCAACCATGTAGAGATTTTGCTGTTGGAAAATGCAGAAGAGGCAGCCGTTGCCATTTTCTTCACCATGACAATCGAAATTATGAGGATGGCTGGGACAGGAGAAACAGGAAAGATGGACCTCCTAGATATTCTGCTCCCTATGAAAGCAGGGACATTTCTGCTAGGAGTGGAAGATCAAGTGAGACCTGTATCAATTTTGCACAAGGGAAATGTAGAATGGGAGCATCTTGCAAGTCTGTGCATCATAGCAATTCTGATGATATGAGCAAAGGAAATGTAGATGAATCAACTAGAGAGAGGGAATTTGATCAAAGGCGTAGGGAGAGTTCTTTCGAGCGTAGTGGTGGGCATGAGCCAAACCGCTTTAGTGGTACTCCCTGCAAATTTTATGCAGCAGGCAATTGTCGCAATGGTAAACATTGCAGGTTTTCTCATGATAGGCAGGCATCTAGGAGTCCAAATAGAAGATTAAGAGATGACAGGTGGGGGGACAATCCAGGTGGAGATCAGGCATTGGATAGAACAAGAGGGAGTAACTCAGTTAGTCCTGGTAGAAGGCTAAGAGATGATAGATGGGGTCCAGATATGGTTGACGTGGATAAAATGTGGGATGGTCCACAACTGAATGATGCTGTTGCTGTCCCAGATACAGCAAAGCTGGGTGAAGACAAGAGTGGAAATATGGGCATACCAGATCCTGGATTCACTACTTGGCCCAGGACTGATGGATGGGGCGATAATTTAGATAACAACAAAGTGTATGCGGAGCCACCTTTTGTGGGTGACAAGAAGAAAGTAGAACAATGGAAGACAGAAAATGCTGGTACTACCATGGGTGCTCCCCAATCAATTGTGACTGACAAATGGCTTGATGATGCAGAAATGTCTCCTGATTGGAATTATGGGAGTGGATCTTCTGGGCACATTGAAGACAAGAGTGGACAGAAAAAGCAAGGTTTGACCCAGGGTGGTGCATATTTAGCCACCTCCGAACATAGTAGATTACAAGTTGCTCCAGGACAAGGTTTCAATCAGAACACACAGAATGTAAATGCTTTGCATCCTTCTAGTTGTAATGTTGTTGGACAAAGTCAAGGGGCAGTCCCTGTTGCTCCTCCACTTGGAGGGTTAGTTGAAGTTATTCAGAACCAAGCATCTTCTGTAAAAAAGTTTAGTGTTGAACCAAACATCATGGATGCAAGCTTATCGCATGTTAGTACAATAAACAATCCAACTCAAAACATGGTGAGCAATGAACAGCTTGCTCATCTTAACAGCCTCTCAGCCTCTCTGGTTCATTTCCTGGGAACAGGTCAGCAACTTCCACAAATTTATGCTGCACTAAATTCTCATGATGCAAAGGACACATCCTCCCTACCCAAAACCAAAACTGAAGTGTCTGGGGAGCCTGTTTCCAGTGCATGCATCAAGCCTGATCCTGTTATTGGATCCCGGAAGCTGTATGATCCAATGAATGATGGTATGGAGCCAAAGAAAACTGATGCAGGTGGAATCACGCCATCCTTTTCTCCCAGTAAAACAATTGCCGATGGTTCAGGGAAACAAAATCATGGTGATTCTTATAAGACTTCAGAAGCACAAATTGTCAAGAGTGAACATTTAATGCCGTTGCAGCCAGGTCAAAAAGCTGAAGCTAATGAGGGAAACAATGACGTGGCAGCTGAGGAAAGGCAAGATTCTCGAGCGGAAGATAGAAATGCAAAAGATAATGGCCCTTCAGAAAATATGGACCAAAATGGGCCTGATGAGGCGAAAAAAATGAAGGATGTGAAAGGGATTCGTGCTTTTAAATTTGCGCTGGTTGAGTTTGTTAAGGAGCTTCTGAAACCAACATGGAAAGAAGGTCATATCAACAAAGAACATTATAAAACAATTGTGAAGAAAGTTGTTGATAAAGTAACCGGTACTATGCAGGGGGCTCATATCCCTCAGACACAAGAAAAAATTGATCACTATCTGTCAGTTTCGAAACCAAAGCTTAACAAACTTGTACAGGCATATGTTGAAAAGGTTCAGAAGGCTTAG 2511 0.4373 MSGSGRRRSSKWDLRDEPEFVSDSKQLRSGWSSANVTGSNSSKWSYLEGNEKLKPNMRLPYKEPFSGGRVSNKDDIMNKDYNRDLDAKMAWDADESYGMKMSPGLEEWKRKRRSHSPKNGLDRSRSRSRSRSPALGFRWESGVNDRNRMRDGGLPQPCRDFAVGKCRRGSRCHFLHHDNRNYEDGWDRRNRKDGPPRYSAPYESRDISARSGRSSETCINFAQGKCRMGASCKSVHHSNSDDMSKGNVDESTREREFDQRRRESSFERSGGHEPNRFSGTPCKFYAAGNCRNGKHCRFSHDRQASRSPNRRLRDDRWGDNPGGDQALDRTRGSNSVSPGRRLRDDRWGPDMVDVDKMWDGPQLNDAVAVPDTAKLGEDKSGNMGIPDPGFTTWPRTDGWGDNLDNNKVYAEPPFVGDKKKVEQWKTENAGTTMGAPQSIVTDKWLDDAEMSPDWNYGSGSSGHIEDKSGQKKQGLTQGGAYLATSEHSRLQVAPGQGFNQNTQNVNALHPSSCNVVGQSQGAVPVAPPLGGLVEVIQNQASSVKKFSVEPNIMDASLSHVSTINNPTQNMVSNEQLAHLNSLSASLVHFLGTGQQLPQIYAALNSHDAKDTSSLPKTKTEVSGEPVSSACIKPDPVIGSRKLYDPMNDGMEPKKTDAGGITPSFSPSKTIADGSGKQNHGDSYKTSEAQIVKSEHLMPLQPGQKAEANEGNNDVAAEERQDSRAEDRNAKDNGPSENMDQNGPDEAKKMKDVKGIRAFKFALVEFVKELLKPTWKEGHINKEHYKTIVKKVVDKVTGTMQGAHIPQTQEKIDHYLSVSKPKLNKLVQAYVEKVQKA 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g2017 836 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 157 177 IPR000571 GO:0046872
Prci9g2017 836 SUPERFAMILY CCCH zinc finger 280 301 IPR036855 GO:0046872
Prci9g2017 836 MobiDBLite consensus disorder prediction 57 76 - -
Prci9g2017 836 MobiDBLite consensus disorder prediction 606 624 - -
Prci9g2017 836 ProSiteProfiles Zinc finger C3H1-type profile. 276 303 IPR000571 GO:0046872
Prci9g2017 836 MobiDBLite consensus disorder prediction 104 129 - -
Prci9g2017 836 MobiDBLite consensus disorder prediction 296 349 - -
Prci9g2017 836 MobiDBLite consensus disorder prediction 8 23 - -
Prci9g2017 836 Pfam CCCH-type zinc finger 281 301 IPR041367 -
Prci9g2017 836 MobiDBLite consensus disorder prediction 238 270 - -
Prci9g2017 836 MobiDBLite consensus disorder prediction 183 199 - -
Prci9g2017 836 MobiDBLite consensus disorder prediction 183 209 - -
Prci9g2017 836 MobiDBLite consensus disorder prediction 25 46 - -
Prci9g2017 836 MobiDBLite consensus disorder prediction 451 477 - -
Prci9g2017 836 MobiDBLite consensus disorder prediction 660 689 - -
Prci9g2017 836 MobiDBLite consensus disorder prediction 711 733 - -
Prci9g2017 836 ProSiteProfiles Zinc finger C3H1-type profile. 152 179 IPR000571 GO:0046872
Prci9g2017 836 MobiDBLite consensus disorder prediction 1 46 - -
Prci9g2017 836 Gene3D - 155 240 - -
Prci9g2017 836 ProSiteProfiles Zinc finger C3H1-type profile. 212 239 IPR000571 GO:0046872
Prci9g2017 836 MobiDBLite consensus disorder prediction 96 152 - -
Prci9g2017 836 SMART c3hfinal6 213 238 IPR000571 GO:0046872
Prci9g2017 836 SMART c3hfinal6 154 178 IPR000571 GO:0046872
Prci9g2017 836 SMART c3hfinal6 276 302 IPR000571 GO:0046872
Prci9g2017 836 MobiDBLite consensus disorder prediction 296 322 - -
Prci9g2017 836 MobiDBLite consensus disorder prediction 232 278 - -
Prci9g2017 836 Gene3D - 274 339 - -
Prci9g2017 836 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1 835 - -
Prci9g2017 836 MobiDBLite consensus disorder prediction 606 746 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g2017 Prci-Chr9 30995686 31004242 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Prci9g2017 zf-CCCH_4 8.3e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g2017 - K22909 gmx:100783856 990.719