Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g2016 ATGGATGTCAACCAAAACCCTACAATATTCACAGGTGTTAACAACTCCACTTGGAATCTGGACACGATGGAAATGGATCATCAAAGTCTCCATCATCAAATCCCTATGTGTTCATCTTGGCCTAACTACCTTCATCACATAATACCGTCTTCTTCGTCCCCCACAATCCCCTCTTCAGGGTTTCCGAACAACGTCGTGCTGGAAGAAGAAGAAGAAGATGGAGAAGGAGGAGGAGAAGAGCTGGGAGCAGTGAAGGAGATGCTGTACAGGATCGCTGCTATGCAGCCAGTGGACATAGACCCAGCCACCATCCGAAAGCCAAAGAGGCGAAACGTCAGAATCAGCGACGATCCGCAAAGCGTGGCCGCGAGGCACAGGAGAGAGAGGATCAGCGAGAAAATCCGAATCCTCCAGAGACTCGTCCCTGGGGGCACCAAGATGGACACTGCCTCCATGCTCGACGAAGCCATTCGCTATGTCAAGTTCTTGAAGCGACAAATCAGGTTGCTCCAATCTCAACCCTCACCCTCACCACAATGCGCCACGAGCACTACTTTTGCCATTGTTGGGGTTAACAATACTGCTAGTTCTAATATTCAAAGCGATCACTGGCCTTTTGCACCACCTTCTTTACTACACTGCCCCACCACCACCACCGCCTCCTCCTCCGCGGCTGCAATGGGCTTGCCCGTCAGACTTGGACTCCGCTCAGGCTATAGTCATGAGTCATGA 732 0.5137 MDVNQNPTIFTGVNNSTWNLDTMEMDHQSLHHQIPMCSSWPNYLHHIIPSSSSPTIPSSGFPNNVVLEEEEEDGEGGGEELGAVKEMLYRIAAMQPVDIDPATIRKPKRRNVRISDDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSQPSPSPQCATSTTFAIVGVNNTASSNIQSDHWPFAPPSLLHCPTTTTASSSAAAMGLPVRLGLRSGYSHES 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g2016 243 Coils Coil 153 173 - -
Prci9g2016 243 FunFam BHLH transcription factor 117 179 - -
Prci9g2016 243 CDD bHLH_AtIND_like 115 173 - -
Prci9g2016 243 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 12 200 IPR045843 GO:0003700|GO:0006355
Prci9g2016 243 Gene3D - 117 179 IPR036638 GO:0046983
Prci9g2016 243 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 114 163 IPR011598 GO:0046983
Prci9g2016 243 Pfam Helix-loop-helix DNA-binding domain 124 163 IPR011598 GO:0046983
Prci9g2016 243 SMART finulus 120 169 IPR011598 GO:0046983
Prci9g2016 243 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 119 175 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g2016 Prci-Chr9 30973340 30974071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g2016 2 189 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G09750 52.358 3.99e-47 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci9g2016 HLH 1.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g2016 - - gmx:100779374 218.009