Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g1990 ATGAACGAAGCTGAAATGACGATTCCTCACTTGTTCAGGTGCCCAATCAGTCTAGACTTGTTTGAGGACCCAGTGACCTTGTGCACGGGCCAAACCTACGACAGGTCCAGCATAGAAAAATGGCTTGCTCAAGGTAATCTCACTTGCCCTGTCACAATGCAGAAGCTTCATGATCCATCCGTCGTCCCCAATCACACTCTTCGTCATTTGATCGATCAGTGGCTTCAATTGTACCCTCAATTTGACCAATTTGATAACTCTAAAACTGTTGATTCTCTAGCCTCTCTGAAACGAACCCTTCAATCTCAGGAATCCACCTTCCAGAACAAGCTCCAAGCGCTTGAAAACATCAGGCTCTTATCTGATGAGTATTGCTCTTTCAATAAATCTTGCTTCCTTCAATTAGGTTTCTTGCCTCTTCTTTTGGGACTGGTTTTTGGAGCTCAAATGTCCAGAGAGCATCATCACATGGAGTTCATAGAGCTTGCTCTTTCTTGCATTATGAAGTTGTTAACCCTTGACAGTACCTCAGAGCCTTTAAATATGCTCAGAGAAGAACCTAAGTTAGAATCGTTTCTTCTATTACTCGAAAAGGGCAGTCCCAATGTTAAAACCAGTCTGTGCAATCTGATAGATTCGGCGGCAGCATCACATTTAGAAGATGTATTGGTTATGCTCGGAAAATCCCAGAAACTAATCAATGAAATTGTTCATCTTGTAAGCCAAAATAACTGCGAGGCTTCCAGGGCTGCAATTAAAGCCATATCAGCGTTATGTTCCTTGCAAACAAACAGAGAGAATATGGTAATAGCAGGGGCAATAGATGGCATCATGAGGTACGTTTCAGGATGTGAAACAAGAGAGAAGAACTTGGCTCCATTGGGGATGGAGATAATAGAGAAGCTTCTGGTAATAGAGAGAGGCAAGGAAGCATTGGTTAATAGCCCAAATGGGATTCAAACTTTGGTGAAGATGGTCTTCAGAGTGAGTAATCAAGAGTGTAGCGAGAATGCAGTGGATCTACTGATGATGGTGTGCAGAGAAAGTGGGCGAGCAAGAGAGGAAGCCATTGAGGGAGGAGTTCTGACTCAGTTGCTTTTGCTTCTGCAGAGCCAATGTAATGCGAAGACGAAGGCGAAGGCAAGAATGCTTCTCAAGTTGTTAAGATCCAAGTGGGCTGAGAAAGTACCAAAACAGGCCTAG 1203 0.4356 MNEAEMTIPHLFRCPISLDLFEDPVTLCTGQTYDRSSIEKWLAQGNLTCPVTMQKLHDPSVVPNHTLRHLIDQWLQLYPQFDQFDNSKTVDSLASLKRTLQSQESTFQNKLQALENIRLLSDEYCSFNKSCFLQLGFLPLLLGLVFGAQMSREHHHMEFIELALSCIMKLLTLDSTSEPLNMLREEPKLESFLLLLEKGSPNVKTSLCNLIDSAAASHLEDVLVMLGKSQKLINEIVHLVSQNNCEASRAAIKAISALCSLQTNRENMVIAGAIDGIMRYVSGCETREKNLAPLGMEIIEKLLVIERGKEALVNSPNGIQTLVKMVFRVSNQECSENAVDLLMMVCRESGRAREEAIEGGVLTQLLLLLQSQCNAKTKAKARMLLKLLRSKWAEKVPKQA 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g1990 400 ProSiteProfiles U-box domain profile. 7 81 IPR003613 GO:0004842|GO:0016567
Prci9g1990 400 FunFam RING-type E3 ubiquitin transferase 8 79 - -
Prci9g1990 400 SMART Ubox_2 11 74 IPR003613 GO:0004842|GO:0016567
Prci9g1990 400 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 89 IPR013083 -
Prci9g1990 400 Gene3D - 90 302 IPR011989 -
Prci9g1990 400 Gene3D - 303 394 IPR011989 -
Prci9g1990 400 SUPERFAMILY RING/U-box 3 76 - -
Prci9g1990 400 CDD RING-Ubox_PUB 9 56 IPR045210 -
Prci9g1990 400 SUPERFAMILY ARM repeat 99 388 IPR016024 -
Prci9g1990 400 PANTHER WDSAM1 PROTEIN 5 394 IPR045185 GO:0061630
Prci9g1990 400 Pfam U-box domain 8 76 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g1990 Prci-Chr9 30827373 30829491 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g1990 8 394 U-box Gene Family AT1G49780 31.852 6.21e-44 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g1990 - - gmx:100819468 514.612