Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g1979 ATGAACAACGGCACCCGAAAACGCCCACCGCCGCCGTCGCAACCCCCTCCGGCTAACCAGCCTAAGAGTCAAGCATTCTCCCAGGAAGAAGAGTTCGTCGATGAGGATGTCTTCCTTGACGAAACCCTTATCCCTGTAGACGAAGAGACCCTCATCCTCCGTGACATTGAGCAACGCCAGGCCCTCGCTTCTCGCTTTGCCAAATGGACTCGTCCGCATCTGTCCTCCGATTACCTTTCACAATCTTGTAGCATTCTTTTTCAGCAGCTGGAGATAGATTATGTCATCGGGGAGAGTCATAAAGAATTGTTGCCAAATTCATCTGGAGCAGCCGCTATTATTAGAATATTTGGAGTTACGAAGGAAGGACATAGTGTTTGCTGCAATGTTCATGGATTTGAACCATATTTCTACATCAACTGCCCTCCTGGAATGAGACCAGATGATATTTCTGGTTTTCATAAAATCCTTGAGGGGAGGATGAAAGAATCCAATAGAAACAGTAAAGTGCCACAATTTGTTCGTCGTATTGAAATGGTGCAGAGAAAGAGTATTATGCACTATCAGCAGCAGAACACCCAGCCATTTTTGAAAATTGTAGTTGCACTACCGACAATGGTTGCCAGTTGTAGAGGTATTCTTGACAGAGGCATTCAGATTGATGGCCTTGGCATGAAGAGCTTTATGACATATGAAAGCAATGTTCTGTTTGCCCTTCGTTTCATGATTGATTGCAATATAGTTGGTGGAAATTGGATTGAAATACCTGCTGGAAAATACAAGAAGACAGCAAAGAACTTGTCTTATTGCCAATTAGAGTTCGACTGCCTGTATTCTGAGTTGATTAGCTATGCACCAGAAGGGGATTTTTCAAAGATGGCTCCTTTTCGCATATTGAGTTTTGATATTGAGTGTGCTGGTCGCAAAGGCCATTTTCCGGAGCCTACTCATGATCCTGTTATTCAGATTGCCAACCTGGTCACATTGCAAGGAGAAGACCAACCATTTATTCGTAATGTCATGACTCTTAAATCATGTTCATCTATAGTTGGCACTGATGTGATGTCATTTGATACAGAAAGAGAAGTCCTGCTAGCATGGAGGGATTTTATCCGTGAAGTGGACCCTGATGTTATAATTGGATATAACATTTGCAAATTTGACCTGCCATATCTTATTGAGAGAGCTGATGCCCTGAAAATAGCAGAATTTCCAATTCTTGGACGCATCAGGAACAGTAGAGTTCGAGTAAAAGATACAACTTTCTCATCAAGACAGCTTGGGACTAGGGAAAGCAAGGAGGTTACAATAGAAGGGAGAGTTCAGTTTGACTTGCTCCAGGCTATGCAGCGAGATTACAAACTGAGTTCTTATTCATTGAATTCTGTTTCAGCACACTTCCTCTCAGAGCAGAAAGAGGATGTTCACCATTCAATTATATCCGATCTTCAGAATGGAAATGCAGATACTAGGAGACGCCTTGCTGTGTATTGTTTGAAGGATGCATATCTCCCTCAACGACTGTTGGATAAATTGATGTTTATTTATAACTATGTGGAGATGGCTCGAGTAACTGGTGTTCCGATTTCTTTTTTACTTTCTAGAGGGCAAAGCATTAAGGTACTGTCTCAACTTCTTAGGAAGGCAAAACAGAAGAACTTGGTTATTCCTAATGTCAAACAGGCTGGGTCAGACCAAGGAACATATGAAGGTGCCACTGTACTGGAAGCAAGAGCTGGATTCTATGAAAAGCCAATTGCTACTTTAGATTTTGCATCCTTGTATCCATCTATTATGATGGCATATAATCTATGCTACTGCTCTCTGGTGACCCCAGAAGATGTTCGCAAGCTCAACCTGCCTCCAGAGTCTGTGAACAAAACTCCATCTGGTGAAACGTTTGTTAAATCAAATTTACAGAAGGGAATACTTCCTGAAATTCTTGAAGAGTTATTAGCAGCCCGTCGAAGGGCTAAAGCAGATTTGAAGGAGGCAAAAGATCCTCTAGAGAAGGCTGTGCTGGATGGTCGACAGCTGGCTCTAAAGGTCAGTGCAAATTCTGTATATGGGTTTACAGGGGCTACTGTTGGTCAGTTACCTTGCATAGAGATATCTTCAAGTGTAACAAGCTATGGTCGGCAAATGATTGAGCACACGAAAAAACTGGTGGAGGATAAATTTACAACGCTCAATGGTTATGAGCACAATGCTGAGGTCATATATGGTGACACAGATTCAGTCATGGTGCAATTTGGTGTTTCCTCTGTGGAAGAGGCTATGAAATTAGGGAGAGAGGCTGCTGAATATATTAGTGGAACTTTCATTAAACCCATCAAACTAGAGTTTGAGAAGGTTTACTATCCATATCTCCTAATTAGCAAGAAGAGATATGCTGGTTTATTTTGGACAAAACCAGACAAATTTGACAAGATGGACACTAAAGGGATTGAAACAGTTCGAAGAGATAATTGTTTATTGGTAAAGAACCTGGTCAATGACTGCCTTCACAAAATTCTGATTGACAGGGACATCCCTGGGGCAGTCCAGCATGTAAAGAATGCAATTTCAGATCTGCTTATGAACCGCATGGATTTGTCACTTCTGGTCATTACAAAGGGTTTAACCAAGACGGGAGATGATTATGAAGTAAAAGCAGCTCACGTTGAACTTGCTGAAAGGATGCGCAAGCGAGATGCTGCCACTGCTCCAAATGTTGGTGATCGAGTACCTTATGTCATAATTAAAGCTGCAAAAGGTGCCAAGGCTTATGAAAAGTCAGAAGATCCCATCTATGTGCTAGAGAACAACATACCAATAGACCCTCAGTATTATCTCGAGAATCAAATTAGCAAGCCAATTCTGAGGATTTTTGAGCCTATTTTGAAGAATGCTAGCAAGGAACTTCTCCATGGAAGCCACACAAGATCCATATCTATTTCTACGCCATCAAACAGTGGCATAATGAAATTTGCTAAGAAACAGCTTACTTGCATCGGTTGCAAAGCTTTACTTAGCAATGGAGATCGCACTCTCTGCTCGCATTGCAGGGGAAGGGAAGCAGAGTTGTACTGCAAAACAGTTGCTCAAGTTTCTGATCTAGAGACGCTTTTTGGGAGGCTTTGGACACAATGTCAAGAATGCCAAGGTTCCCTTCATCAGGATGTTCTTTGCACAAGTCGAGATTGCCCCATTTTTTATAGAAGGAAAAAGGCACAGAAAGATATGGCTGAAGCAAAGTTGCAATTGGACCGGTGGAATTTCTAG 3264 0.4206 MNNGTRKRPPPPSQPPPANQPKSQAFSQEEEFVDEDVFLDETLIPVDEETLILRDIEQRQALASRFAKWTRPHLSSDYLSQSCSILFQQLEIDYVIGESHKELLPNSSGAAAIIRIFGVTKEGHSVCCNVHGFEPYFYINCPPGMRPDDISGFHKILEGRMKESNRNSKVPQFVRRIEMVQRKSIMHYQQQNTQPFLKIVVALPTMVASCRGILDRGIQIDGLGMKSFMTYESNVLFALRFMIDCNIVGGNWIEIPAGKYKKTAKNLSYCQLEFDCLYSELISYAPEGDFSKMAPFRILSFDIECAGRKGHFPEPTHDPVIQIANLVTLQGEDQPFIRNVMTLKSCSSIVGTDVMSFDTEREVLLAWRDFIREVDPDVIIGYNICKFDLPYLIERADALKIAEFPILGRIRNSRVRVKDTTFSSRQLGTRESKEVTIEGRVQFDLLQAMQRDYKLSSYSLNSVSAHFLSEQKEDVHHSIISDLQNGNADTRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVIPNVKQAGSDQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCSLVTPEDVRKLNLPPESVNKTPSGETFVKSNLQKGILPEILEELLAARRRAKADLKEAKDPLEKAVLDGRQLALKVSANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVEDKFTTLNGYEHNAEVIYGDTDSVMVQFGVSSVEEAMKLGREAAEYISGTFIKPIKLEFEKVYYPYLLISKKRYAGLFWTKPDKFDKMDTKGIETVRRDNCLLVKNLVNDCLHKILIDRDIPGAVQHVKNAISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYEKSEDPIYVLENNIPIDPQYYLENQISKPILRIFEPILKNASKELLHGSHTRSISISTPSNSGIMKFAKKQLTCIGCKALLSNGDRTLCSHCRGREAELYCKTVAQVSDLETLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMAEAKLQLDRWNF 1087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g1979 1087 Gene3D - 295 513 IPR036397 GO:0003676
Prci9g1979 1087 FunFam DNA polymerase 91 266 - -
Prci9g1979 1087 Gene3D - 815 970 IPR042087 -
Prci9g1979 1087 PRINTS DNA-directed DNA-polymerase family B signature 586 599 IPR006172 GO:0000166|GO:0003676|GO:0003887
Prci9g1979 1087 PRINTS DNA-directed DNA-polymerase family B signature 739 747 IPR006172 GO:0000166|GO:0003676|GO:0003887
Prci9g1979 1087 PRINTS DNA-directed DNA-polymerase family B signature 678 690 IPR006172 GO:0000166|GO:0003676|GO:0003887
Prci9g1979 1087 FunFam DNA polymerase 334 568 - -
Prci9g1979 1087 SUPERFAMILY Ribonuclease H-like 110 533 IPR012337 -
Prci9g1979 1087 Gene3D Palm domain of DNA polymerase 568 798 IPR023211 -
Prci9g1979 1087 Gene3D DNA Polymerase, chain B, domain 1 90 266 - -
Prci9g1979 1087 CDD DNA_polB_delta_exo 291 519 - -
Prci9g1979 1087 Pfam DNA polymerase family B, exonuclease domain 120 463 IPR006133 -
Prci9g1979 1087 NCBIfam DNA polymerase (pol2) 345 958 - -
Prci9g1979 1087 SUPERFAMILY DNA/RNA polymerases 552 962 IPR043502 -
Prci9g1979 1087 Gene3D Helix hairpin bin 642 694 - -
Prci9g1979 1087 Pfam DNA polymerase family B 527 960 IPR006134 GO:0000166|GO:0003677
Prci9g1979 1087 PANTHER DNA POLYMERASE CATALYTIC SUBUNIT 70 1053 - -
Prci9g1979 1087 ProSitePatterns DNA polymerase family B signature. 741 749 IPR017964 GO:0000166|GO:0003676
Prci9g1979 1087 SMART polmehr3 294 753 IPR006172 GO:0000166|GO:0003676|GO:0003887
Prci9g1979 1087 FunFam DNA polymerase 815 971 - -
Prci9g1979 1087 MobiDBLite consensus disorder prediction 1 28 - -
Prci9g1979 1087 Pfam C4-type zinc-finger of DNA polymerase delta 997 1068 IPR025687 -
Prci9g1979 1087 FunFam DNA polymerase 642 694 - -
Prci9g1979 1087 CDD POLBc_delta 568 961 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g1979 Prci-Chr9 30742887 30759242 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g1979 6 1087 Core DNA Replication Machinery Family AT5G63960 81.307 0.0 1865
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g1979 K02327 - gmx:100817379 1957.18