Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g1978 ATGACAGTTGGTGAGGACTGCTTCGATTTTACTGACCTTCACGACCCAGGAGACTCGTCAATTTTGCCCAGTCTTCATGAAGTTTCAGAGAGCCAACTGTGTGTGCCTCCTGACTCGTTAGAAGGCTTGGAATGGGAATGGTTCCCCAGCTTCTCCGAAGATTTTATTAGTTGGAACCAAAAAGGCTCGTTTTGTGTTGGGAGTGACCAGCCTTGTACATATGAACTTGTGGAGAATGGAGCTGTGAATGAAGATTGGGTCAGAATTTATGGGGACGCAGTAAGCAGCTTTACGAAGAAGAAGAAAAGGTCGAGGAAGAGGACGACGCCACGGTCGGTGGGGATGGACAGCAAGAGGTGCAGCCACTGCGAAACGGAGGAGACGCCACAATGGAGGTATGGGCCTGAGGGGCCCAAGACACTGTGCAATGCGTGTGGTATGAGGTTCAAGTCCGGAAGGCTCCCGCCGGAGTATCATCCGGCCGCCAGTCCTACTTTTAATAGCTGCAAGCATCCTAATTACCATAGGAAAATAATGGAAAGGCGAGGATTTAATTGTTAA 561 0.4955 MTVGEDCFDFTDLHDPGDSSILPSLHEVSESQLCVPPDSLEGLEWEWFPSFSEDFISWNQKGSFCVGSDQPCTYELVENGAVNEDWVRIYGDAVSSFTKKKKRSRKRTTPRSVGMDSKRCSHCETEETPQWRYGPEGPKTLCNACGMRFKSGRLPPEYHPAASPTFNSCKHPNYHRKIMERRGFNC 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g1978 186 Pfam GATA zinc finger 120 154 IPR000679 GO:0006355|GO:0043565
Prci9g1978 186 Gene3D - 115 161 IPR013088 GO:0006355|GO:0008270
Prci9g1978 186 FunFam GATA transcription factor 114 164 - -
Prci9g1978 186 ProSiteProfiles GATA-type zinc finger domain profile. 114 150 IPR000679 GO:0006355|GO:0043565
Prci9g1978 186 PANTHER GATA TRANSCRIPTION FACTOR 102 182 - -
Prci9g1978 186 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 117 176 - -
Prci9g1978 186 SMART GATA_3 114 164 IPR000679 GO:0006355|GO:0043565
Prci9g1978 186 CDD ZnF_GATA 119 156 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g1978 Prci-Chr9 30736791 30737506 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g1978 102 182 C2C2-Gata Transcription Factor Family AT5G25830 62.963 3.40e-32 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Prci9g1978 GATA 2.3e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g1978 - - pcin:129319443 400.593