Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g1961 ATGGTAAAGGAAGAAATCAGCAATGATAGTTTCTCAAATGTTGAGACTGAGGATTCAGAATCTCACTCTCAACATAGTCCTGAGAAGGAGACAGGCTGGACAAGGATGAACTGTCGTGTGTGCCAGTGTGCTGAATCTGATAAGAGGGGAGATGCTGCTCTAGAATTTTTGGGCATCACTCCAGTTTTAGAACCTGATGTAAGTAATGTAGAAGAAAAGTCAGATTGCGAGGAAATTTCTAAAAACGCATCTCTTAAGAGAATTGTTGGAAGTAAATCTGGGGTTGTGGAGTTTGTAAGCCCTGATGGAGAGGTCTTCATTTGCAAAACTGATTTAGAAATGGGTCTTTCTCATCGAGACACTCTTATTGAACTTGGTTGTTGTTGTAAAAATGACCTTGCTGTAGTACACTATGCATGTGCACTTAAATGGTTTGTCAATCATGGATCTACCATCTGTGAAATATGTGGAAATGAGGCAAAAAATGTCAGAATTGCTGACTTTAATAAGGTTGTTGCTTCTTTGAAAGAGTATGAAGCATTGAGGGAAAGAACTGCCATTGGGCAACCCAGTCCTGCTCAAGTTCATGCAAATACTGGTGTAGATCCTGATGCTGTGGCTGCTATCAGGAGGCTACGGCTAAGTGAAATTGCACTATGGTTTTGTCCTCGTAATAGCAGTAACAACAACAATGTGGACACAGTCGCTCTGGTCGTTTCTGAACAACCTTTAAATACTGTTACTGAAGATGCAGCACCTGTCCAAAATCCTGCAACTAAGTGGGCAGTAGAGATTACTGGGATCCTGCTTGCTACTGGGCTACTTACTGTCATCCTTGCATGGCTCATAGCTCCTCGTGTTGGGAAGAAAACTGCAAGAAGTGGTCTTCATATCTTACTTGGAGGCATTTGTGCTTTGACGGTTGTGGTTTTCTTCCGCTTTTTCGTGCTCACCAGAATTAAGTATGGACCTGCACGTTACTGGGCAATTTTGTTCATTTTCTGGTTTCTTGTGTTTGGAATTTGGGCTTCACGGACACACAGTGCTCATACGACGTGA 1059 0.423 MVKEEISNDSFSNVETEDSESHSQHSPEKETGWTRMNCRVCQCAESDKRGDAALEFLGITPVLEPDVSNVEEKSDCEEISKNASLKRIVGSKSGVVEFVSPDGEVFICKTDLEMGLSHRDTLIELGCCCKNDLAVVHYACALKWFVNHGSTICEICGNEAKNVRIADFNKVVASLKEYEALRERTAIGQPSPAQVHANTGVDPDAVAAIRRLRLSEIALWFCPRNSSNNNNVDTVALVVSEQPLNTVTEDAAPVQNPATKWAVEITGILLATGLLTVILAWLIAPRVGKKTARSGLHILLGGICALTVVVFFRFFVLTRIKYGPARYWAILFIFWFLVFGIWASRTHSAHTT 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g1961 352 PANTHER ZINC FINGER, RING-CH-TYPE 14 319 - -
Prci9g1961 352 Pfam RING-variant domain 122 156 IPR011016 GO:0008270
Prci9g1961 352 MobiDBLite consensus disorder prediction 1 31 - -
Prci9g1961 352 MobiDBLite consensus disorder prediction 15 29 - -
Prci9g1961 352 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 161 IPR013083 -
Prci9g1961 352 SMART ringv_2 107 157 IPR011016 GO:0008270
Prci9g1961 352 SUPERFAMILY RING/U-box 121 159 - -
Prci9g1961 352 ProSiteProfiles Zinc finger RING-CH-type profile. 97 163 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g1961 Prci-Chr9 30647575 30651642 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g1961 6 342 C3H Transcription Factor Family AT5G08750 62.857 1.56e-145 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g1961 - - qsa:O6P43_023412 508.834