Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g1960 ATGGGAGATGGCAATAGTACCACCGGCACCAATCGGTCCAACAACAATAACAGTGGCAGTTACAATAAGCCTGAGTGGCTACAACAGTACGATCTGATAGGGAAAATTGGGGAAGGTACCTATGGTCTTGTGTTCCTCGCAAGGATTAAGTCTGCGACGAATCGCGGAAAATCAATTGCCATCAAGAAATTCAAGCAGTCCAAGGATGGCGACGGAGTCTCTCCCACCGCTATCCGTGAAATTATGGAAATCATTAGGCATCACAGGGACAAAGTCAGCCATTCTATTAATCAATATACTGTTAAATCATTACTTTGGCAGCTGCTCAATGGACTAAACTATCTGCATAGTAATTGGATAATCCATCGAGACCTTAAGCCATCAAATATATTGGTTATGGGTGAAGGAGAGGAACACGGAGTTGTTAAAATTGCTGACTTTGGACTTGCAAGGATATATCAGGCACCTTTAAAGCCATTATCTGAAAATGGAGTTGTTGTTACCATTTGGTATCGTGCACCTGAGTTGCTTCTTGGGGCAAAACATTATACCAGTGCTGTTGATATGTGGGCTGTTGGATGCATTTTTGCTGAGCTGTTAACTCTAAAGCCACTATTTCAAGGAGCAGAAGTCAAAGCCACACCTAATCCATTTCAGCTTGATCAACTTGACAAGATATTCAAGGTTTTAGGCCATCCCACATTAGAAAAGTGGCCTTCCCTAGCATATCTTCCCCATTGGCAACAAGATCTTCAGCATATACAAGGGCGCAAATATGACAACACTAGCCTTTGTAATGTTGTACATCTAGCTCCAAAAAGTCCTGCTTATGATCTCCTGTCAAAGATGCTTGAATATGATCCTCGAAAGCGAATAACAGCAGCCCAAGCTTTGGAACATGAGTATTTCAAAATGGAACCACTGCCCGGGCGAAATGCTCTTGTGCCCTGCCAACTTGGAGAGAAAGCTGTGAATTATCCCACTCGTCCAGTTGACACAACAACAGATTTCGAAGGGACAACCAATTTGCAACCTCCTCAACCGGTTTCATCTGGAAATGCTGTTTCTGGCAGCATGACTGGTGGTCATGTATCAAATAGATCTGTCCCTCGGCCAATGAATGTTGTTGGCATGCCAAGGATGCCTCCTATGCAAGCTTATAACCTTGCATCCCAGGCAGGGATGGGTGGTGGAATGAATTCTAGTGGCATCCCATTGCCACGAGGTGTTGCACAGGCTCATCCGCAGCAGCAGTTGAGAAGGAAAGACGGTGGAATGATGTTGCCTGGATACCCTCCACAGCAAAAGTCGAGGCGTAACTAA 1323 0.4467 MGDGNSTTGTNRSNNNNSGSYNKPEWLQQYDLIGKIGEGTYGLVFLARIKSATNRGKSIAIKKFKQSKDGDGVSPTAIREIMEIIRHHRDKVSHSINQYTVKSLLWQLLNGLNYLHSNWIIHRDLKPSNILVMGEGEEHGVVKIADFGLARIYQAPLKPLSENGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCIFAELLTLKPLFQGAEVKATPNPFQLDQLDKIFKVLGHPTLEKWPSLAYLPHWQQDLQHIQGRKYDNTSLCNVVHLAPKSPAYDLLSKMLEYDPRKRITAAQALEHEYFKMEPLPGRNALVPCQLGEKAVNYPTRPVDTTTDFEGTTNLQPPQPVSSGNAVSGSMTGGHVSNRSVPRPMNVVGMPRMPPMQAYNLASQAGMGGGMNSSGIPLPRGVAQAHPQQQLRRKDGGMMLPGYPPQQKSRRN 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g1960 440 MobiDBLite consensus disorder prediction 398 440 - -
Prci9g1960 440 ProSitePatterns Protein kinases ATP-binding region signature. 36 63 IPR017441 GO:0005524
Prci9g1960 440 Gene3D Phosphorylase Kinase; domain 1 28 89 - -
Prci9g1960 440 Gene3D Transferase(Phosphotransferase) domain 1 91 306 - -
Prci9g1960 440 FunFam Putative cyclin-dependent kinase E-1 77 316 - -
Prci9g1960 440 Pfam Protein kinase domain 93 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci9g1960 440 ProSitePatterns Serine/Threonine protein kinases active-site signature. 120 132 IPR008271 GO:0004672|GO:0006468
Prci9g1960 440 MobiDBLite consensus disorder prediction 338 370 - -
Prci9g1960 440 MobiDBLite consensus disorder prediction 338 367 - -
Prci9g1960 440 ProSiteProfiles Protein kinase domain profile. 1 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci9g1960 440 SUPERFAMILY Protein kinase-like (PK-like) 25 305 IPR011009 -
Prci9g1960 440 MobiDBLite consensus disorder prediction 1 22 - -
Prci9g1960 440 PANTHER CELL DIVISION PROTEIN KINASE 28 309 - -
Prci9g1960 440 SMART serkin_6 30 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g1960 Prci-Chr9 30638083 30645348 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g1960 23 439 Core Cell Cycle Gene Families AT5G63610 69.783 0.0 627
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK8 Prci9g1960 Pkinase 3.2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g1960 K02208 - qsa:O6P43_023415 732.25