Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g1953 ATGTCAGGTGAATATTCCTCCCAGATCAAAGAGGCTTATATTCCTCTAAAACGAATGACCAGGTGGCTAGTATTCTTGGCCATCTTAGGACTCAGCTGTGCAACCACTGGTCCTGATGTGGAAGGTGAAGCTTTGTTAGATTTTTTGAGGGTTCTCAATGATTCCAACCATCAAATGACAGATTGGAATAGTTTTCTTGTGAGCCCTTGCTTTAGTTGGTCTCATGTAACATGTAGAGACGGACATGTCATATCTCTGAGCTTGGGTTCAAAAGGCTTTACTGGAACGCTGTCTCCTTCAATTACCAAATTGAAATACTTGATTACCTTGGAATTGCAGAACAATAGCCTTTCAGGTTCCTTACCTGATTACATTGCCAGCTTCACACACCTGCAATATCTAAATCTTGCTGACAATAATTTCAATGGTTCTATACCGTCGACATGGGGTCAACTTTCCTCTCTGAGGACTCTGGTATTGAGAGGGAATGACTTGTCTGGACGCATACCGGATTCTGTTGAAAATCTTAGTGGGTTATCAGAATTGGATCTTTCTTTTAATAATTTAACTGGATCCATCCCAAAGCACCTCTTTTCAATTCCAATCTTCAGCTTTTCAGATACGGACCTTCATTGTGGCTCTAGTTTGGAGCAGCCTTGTGTTTCTAATTCAGCTATTTCAGCCTCAACTAACAAATCAAAAGTAGCTGTGGCTTTAAGTTTGGCAAGTTGTGGCGCATTTGGAATTCTGTGTTTAGGGGCCATCTTTTCATATGTATGCCATTACATTCAAAGACACAAAAATGATGTTTTCGTTGATGTCTCAGGTGAAGATGAGAGCAAGATTTCATTTGGGCAACTGAGAAGATTTTCTCTGCGAGAACTTCATCTAGCAACAACAAATTTCAGTGAAAGCAACGTGATTGGCCAAGGAGGCTTTGGAAAAGTGTACAAAGGAGTACTCTCAGATAATACAAGGATTGCAGTGAAACGCCTGGCTGATTATCATAATCCTGGCGGAGAGGCTGCATTCCAAAGAGAAGTTCAACTTATAAGCGTTGCAGTTCATAGAAATCTCCTGCGTTTGATGGGGTTCTGCACAACTTCAACAGAAAGAATCCTTGTATATCCTTTCATGGAAAATCTAAGTGTTGCATATCGTTTGAGAGATTTGAAACCTAAAGAGAAAGGTCTGGACTGGCCAACGAGGAAACGTATTGCATTTGGTACAGCGCATGGATTAGAGTATTTGCACGAGCAATGTAATCCTAAGATCATACACCGTGATTTAAAGGCTGCAAACATCCTACTAGACGATGAATTTGAAGCAGTTCTGGGAGATTTTGGGCTAGCAAAGCTAGTTGATACAAGACTGACTAGTGTTACCACTCAAGTAAGGGGTACAATGGGACATATAGCCCCAGAATACCTGTCCACAGGAAAATCATCAGGGAAAACAGACGTCTTTGGATATGGCATAACACTTCTTGAAATCGTGACAGGTCAGCGAGCAATTGACTTCTCACGACTGGAAGAGGAGGAGGATGTTCTTCTGCTAGATCATATTAAGAAGCTGCTGAGAGAGAAGAGGATAAGGGACATAGTGGACAAGAATTTGGAGAGTTATGATGCAAAAGAAGTAGAGAGGAGTATTCAAGTGGCATTGCTTTGCACGCAAGGCTCACCTGAGGATCGACCAAGCATGTCAGAGGTGGTGAACTTGCTGAATGGAGAAGGTTTGGCAGAGCGATGGGCTGAGTGGGAGCAAATGGAAGAGATGAACAGTAGAGAAATGTCACTATTAGCTCACCAATTTGCTTGGGCTGTTGAATCCACGCATGATCAAGAGTCAATTCAGCTTTCCTGGGCAAGATAA 1875 0.4208 MSGEYSSQIKEAYIPLKRMTRWLVFLAILGLSCATTGPDVEGEALLDFLRVLNDSNHQMTDWNSFLVSPCFSWSHVTCRDGHVISLSLGSKGFTGTLSPSITKLKYLITLELQNNSLSGSLPDYIASFTHLQYLNLADNNFNGSIPSTWGQLSSLRTLVLRGNDLSGRIPDSVENLSGLSELDLSFNNLTGSIPKHLFSIPIFSFSDTDLHCGSSLEQPCVSNSAISASTNKSKVAVALSLASCGAFGILCLGAIFSYVCHYIQRHKNDVFVDVSGEDESKISFGQLRRFSLRELHLATTNFSESNVIGQGGFGKVYKGVLSDNTRIAVKRLADYHNPGGEAAFQREVQLISVAVHRNLLRLMGFCTTSTERILVYPFMENLSVAYRLRDLKPKEKGLDWPTRKRIAFGTAHGLEYLHEQCNPKIIHRDLKAANILLDDEFEAVLGDFGLAKLVDTRLTSVTTQVRGTMGHIAPEYLSTGKSSGKTDVFGYGITLLEIVTGQRAIDFSRLEEEEDVLLLDHIKKLLREKRIRDIVDKNLESYDAKEVERSIQVALLCTQGSPEDRPSMSEVVNLLNGEGLAERWAEWEQMEEMNSREMSLLAHQFAWAVESTHDQESIQLSWAR 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g1953 624 Pfam Leucine rich repeat 130 189 IPR001611 GO:0005515
Prci9g1953 624 Gene3D Transferase(Phosphotransferase) domain 1 379 596 - -
Prci9g1953 624 FunFam Somatic embryogenesis receptor-like kinase 1 379 595 - -
Prci9g1953 624 SUPERFAMILY Protein kinase-like (PK-like) 280 575 IPR011009 -
Prci9g1953 624 Gene3D Ribonuclease Inhibitor 38 222 IPR032675 -
Prci9g1953 624 FunFam Somatic embryogenesis receptor kinase 1 271 378 - -
Prci9g1953 624 ProSiteProfiles Protein kinase domain profile. 302 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci9g1953 624 Gene3D Phosphorylase Kinase; domain 1 271 378 - -
Prci9g1953 624 FunFam Leucine-rich repeat receptor-like protein kinase 38 195 - -
Prci9g1953 624 Pfam Protein kinase domain 303 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci9g1953 624 ProSitePatterns Serine/Threonine protein kinases active-site signature. 425 437 IPR008271 GO:0004672|GO:0006468
Prci9g1953 624 Pfam Leucine rich repeat N-terminal domain 40 78 IPR013210 -
Prci9g1953 624 SMART serkin_6 302 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci9g1953 624 SUPERFAMILY L domain-like 41 305 - -
Prci9g1953 624 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 22 586 - -
Prci9g1953 624 ProSitePatterns Protein kinases ATP-binding region signature. 308 330 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g1953 Prci-Chr9 30591335 30594813 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g1953 19 624 Receptor kinase-like Gene Family AT5G10290 57.610 0.0 677
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Prci9g1953 Pkinase 4.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g1953 - - pcin:129307818 931.784