Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g1887 ATGGCAGCCTTTTCATTCCAATGCCACCCTTTTCTTGTTGACTCTCCACTTTTCTCTAGTGCTCCCATTAAGACGACAGCTTTCACTGACCAGGCTCAGGTTCAGCCTCAGCCTCATACGAACCCTGCTCCTCAGTTTCACGAGACATCTTTTCACATCACAAATCAGGAGAATAGCTTTGTTGATCAGAACTCCAAGTTTAACATGAGTGATAATGAGCCTCCTTCTGTCACCAAAAACCAGAGTCCTGAGACCTCTGTGGTGTTGGATAAGCTTGAACCTGGTGAGCAGGTCACTCAGAAGGTGACTCCTATGGAGAAGAAGAGAAACAGGAATCGTTCGAGTCATCCTCAATCTAAGGAAGCTACCGGGGAAAGAAAGAAGAAACAGAAGAAGAGCAACAACGGAGAGGCGAAAGAAGGAGATAAGCCAAAAGATGAGAAGAAGAATCAGAAGAAGAGTCCTGAAGAACCTCCAACAGGTTATATCCACGTGAGAGCAAGAAGAGGTCAGGCAACCGATAGCCACAGCCTAGCTGAAAGGGTAAGAAGAGAGAAGATAAGTGAGAGGATGAAGATGTTGCAGCGACTCGTTCCAGGCTGTGATAAGGTGACTGGAAAAGCCCTCATGTTGGATGAAATAATCAATTATGTTCAGTCCCTACAGAATCAAGTGGAGTTCTTGTCAATGAAACTTGCTTCTGTGAACCCCGTGTACTATGACTTCACAATGGACCTAGACTCCCTCATGGTCAGACCAGAGAAATCAAATTTCGTGCCATCTGTGCCACAATGCAGCCTCAACCAGGCGACAACTTTTGCTGATACAAGCATCACCACCACCACTCCCATGGGCTTTCCTACTGCTAATGACTATCCTTCGGACAATTCGGCTTCTTTTTCTCTTCAAGGACAGAGGTCTAATGTCTTATCTGAGGACACGAGTAGTCAATTCTGGGACATAGAAGACCCACGCCAAAAGTTTCTTCATCCATATGGGATCAACAACAGCTTATGTTTCTTTCATTAA 1029 0.4529 MAAFSFQCHPFLVDSPLFSSAPIKTTAFTDQAQVQPQPHTNPAPQFHETSFHITNQENSFVDQNSKFNMSDNEPPSVTKNQSPETSVVLDKLEPGEQVTQKVTPMEKKRNRNRSSHPQSKEATGERKKKQKKSNNGEAKEGDKPKDEKKNQKKSPEEPPTGYIHVRARRGQATDSHSLAERVRREKISERMKMLQRLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLASVNPVYYDFTMDLDSLMVRPEKSNFVPSVPQCSLNQATTFADTSITTTTPMGFPTANDYPSDNSASFSLQGQRSNVLSEDTSSQFWDIEDPRQKFLHPYGINNSLCFFH 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g1887 342 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 54 277 IPR024097 GO:0006355
Prci9g1887 342 MobiDBLite consensus disorder prediction 64 87 - -
Prci9g1887 342 Pfam Helix-loop-helix DNA-binding domain 175 222 IPR011598 GO:0046983
Prci9g1887 342 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 171 221 IPR011598 GO:0046983
Prci9g1887 342 MobiDBLite consensus disorder prediction 102 155 - -
Prci9g1887 342 Gene3D - 168 237 IPR036638 GO:0046983
Prci9g1887 342 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 169 238 IPR036638 GO:0046983
Prci9g1887 342 SMART finulus 177 227 IPR011598 GO:0046983
Prci9g1887 342 MobiDBLite consensus disorder prediction 64 179 - -
Prci9g1887 342 CDD bHLH_AtBPE_like 161 246 - -
Prci9g1887 342 FunFam Basic helix-loop-helix transcription factor 168 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g1887 Prci-Chr9 30254033 30256751 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g1887 1 291 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 44.932 5.73e-65 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci9g1887 HLH 2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g1887 - - gmx:100796018 409.453