Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g1874 ATGACCAAATTCACCATTGCTTTGAGAGAAATCGGCACCTATAAAGAAGTTTTACGGTCTCAGGTTGAGCACATGCTTAATGACCGGTTGCTACACATTCTCAATGTTGACATCCAAGATGTTAAGGAAGCTCGAAAGCGATTTGACAAAGCTTCTCTTGTATATGATCAGGCACGTGATAAATTTCTGTCATTGAGAAAGAGCACTAGGATGGATATTGCTAGTGCCATCGAAGAGGAATGGCACATTGCAAGAGATTCATTTGAGGAAGCCCGTTGCAATCTGGTTAGTGCTCTAAATAATGTTGAGGCCAAGAAGAGATTTGAATTTTTGGAGGCTGTCAGTGGAATTATGGATGCTCATCTTCGATACTTTCAACAGGGATATCAGCTATTGCATCAGATGGAACCTTTCATTACTGAGGTTTTGGCTTATGCACAGCAGTCAAGAGAAAGTTACAATACGGATCAGATCTCTCTAAATGAAAAAATGCAAGAGTACAAAAGACAAATTCATCAAGAAAGTAGATTGTCTTTAAATGGTCCCAATGGTTCTCCTGGAGACTGTGTACAGCCTTTTTCTAGGATATCAAATGAAGTGGTAGATGCAGTAAAAGAATCTGCTGCAAATGGGAAGGTTCAAATTATTCGGCAAGGATTTCTTTCAAAACGCTCATCCAATCTGAGGGGTGACTGGAAGAGAAGGTATTTTGTTCTTGATAGTCGAGGAATGCTGTTCTATTATCGCAAACCATGGAACTGGTCTCATAGCAGCAATCTACCATCTGTACAGAGAAATAATGCCACTGAAAATGGCTCTGGAATTCTGAGCCGGTGGCTTTCTTCTCATTATCATGGGGGTGTCCATGATGAACGATCTGTGGCACGTCATGCAGTGAACCTGCTTACATCAACAATTAAGGTTGATGCTGATCAGACAGATCTAAGATTTTGCTTCCGGATTATTTCACCAGTAAAGAACTATACATTGCAGGCAGAAAATGCAGTGGACCAGATGGATTGGATTGAAAAAATGACAGGAGTAATTGCTTCCTTGTTGAGTGTTCAGTCGGTAGAAATGCCTCTCACAGCTGACTCTGAAAGTGGTGGCTGTTCCTCTTCAAGTAAGATTGATATGCTGGAAAACTTTCAAGACGATGATCAACCAATGAGTAAGGAGTGTGCATCCAAGAACATCACTTCAAATAATCATTTGCGTGAATATAAAAGTTTTCAGTTGCATAAACAGAGTATTAGAGGTGAAAAACCAATTGATGTTCTTAGAAGGGTAGGTGGAAATGAGAGATGTGCTGATTGTGGTAAACCTGAACCAGACTGGGCATCCTTAAACCTCGGTATTCTCATATGCATAGAGTGTTCTGGCATTCATCGTAATCTTGGTGTACATATATCAAAAGTAAGATCACTGACTCTTGATGTGAAAGTCTGGGACCCTTCTGTCCTAACTATGTTTCAGTCACTGGGCAATCATTTTGCAAACTCAGTTTGGGAAGAAACATTGAATTCAGCAAGTGAAATGCAAGCTGATGATGCAAATGTTGAAAACAGATTATTCCGCGTGAGGAAACCAGAACATGATGATTCTATCTCATTAAAAGAGAGGTTCATTCATGCAAAGTATTCTGAGAAAATCTTTGTCGATCAGATAAAGGATAACAACCATCTCCTTTCAGTGGCGCAACAACTGTGGGAAAGTGTTTGCGCCAATGATAAGAAAGCAGTGTACCAGTATATTGTGAAGTCTGATCTGGATGTCAATGCTGTCTGTGGGCAAGAATATTTTGATGACGCTTTTGACATGCCTTCAAGCAATTCAAAATCTTCAGCCAAGAGTGAAAACCAACCAATAGAGGATATACTTGATGGTTCTACTGTGCTTCACCTGGCATGCCTGACTGCTGACATTGCCATGGTGGAGCTGCTCTTACAATATGGCGCAGACATTAATGCATCCGATTCAAGAGGTCGCACACCACTGCATTACTGTATTATCAGAGGGAAGAATGCAACTGCAAAATTGCTTCTGATAAGAGGGGCGAATCCACATGCGGCAGATGATGAAGGCAATACTCCTCTTAAACTTGCATCAGAATCCGCTTCTATTAGCAATGATGTTCTCGCCCTCATTACAAGATGA 2157 0.408 MTKFTIALREIGTYKEVLRSQVEHMLNDRLLHILNVDIQDVKEARKRFDKASLVYDQARDKFLSLRKSTRMDIASAIEEEWHIARDSFEEARCNLVSALNNVEAKKRFEFLEAVSGIMDAHLRYFQQGYQLLHQMEPFITEVLAYAQQSRESYNTDQISLNEKMQEYKRQIHQESRLSLNGPNGSPGDCVQPFSRISNEVVDAVKESAANGKVQIIRQGFLSKRSSNLRGDWKRRYFVLDSRGMLFYYRKPWNWSHSSNLPSVQRNNATENGSGILSRWLSSHYHGGVHDERSVARHAVNLLTSTIKVDADQTDLRFCFRIISPVKNYTLQAENAVDQMDWIEKMTGVIASLLSVQSVEMPLTADSESGGCSSSSKIDMLENFQDDDQPMSKECASKNITSNNHLREYKSFQLHKQSIRGEKPIDVLRRVGGNERCADCGKPEPDWASLNLGILICIECSGIHRNLGVHISKVRSLTLDVKVWDPSVLTMFQSLGNHFANSVWEETLNSASEMQADDANVENRLFRVRKPEHDDSISLKERFIHAKYSEKIFVDQIKDNNHLLSVAQQLWESVCANDKKAVYQYIVKSDLDVNAVCGQEYFDDAFDMPSSNSKSSAKSENQPIEDILDGSTVLHLACLTADIAMVELLLQYGADINASDSRGRTPLHYCIIRGKNATAKLLLIRGANPHAADDEGNTPLKLASESASISNDVLALITR 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g1874 718 SUPERFAMILY Ankyrin repeat 574 705 IPR036770 -
Prci9g1874 718 SUPERFAMILY PH domain-like 126 349 - -
Prci9g1874 718 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 403 561 - -
Prci9g1874 718 ProSiteProfiles Ankyrin repeat profile. 628 660 IPR002110 GO:0005515
Prci9g1874 718 Gene3D Arfaptin homology (AH) domain/BAR domain 1 174 IPR027267 -
Prci9g1874 718 Gene3D - 565 717 IPR036770 -
Prci9g1874 718 PRINTS HIV Rev interacting protein signature 475 496 IPR001164 GO:0005096
Prci9g1874 718 PRINTS HIV Rev interacting protein signature 433 452 IPR001164 GO:0005096
Prci9g1874 718 PRINTS HIV Rev interacting protein signature 452 469 IPR001164 GO:0005096
Prci9g1874 718 Pfam PH domain 216 346 IPR001849 -
Prci9g1874 718 ProSiteProfiles ARF GTPase-activating proteins domain profile. 421 560 IPR001164 GO:0005096
Prci9g1874 718 ProSiteProfiles Ankyrin repeat region circular profile. 628 659 - -
Prci9g1874 718 SUPERFAMILY BAR/IMD domain-like 2 237 IPR027267 -
Prci9g1874 718 CDD PH_ACAP 217 354 - -
Prci9g1874 718 ProSiteProfiles Ankyrin repeat region circular profile. 661 693 - -
Prci9g1874 718 Coils Coil 41 61 - -
Prci9g1874 718 SUPERFAMILY ArfGap/RecO-like zinc finger 421 554 IPR037278 -
Prci9g1874 718 SMART ANK_2a 661 690 IPR002110 GO:0005515
Prci9g1874 718 SMART ANK_2a 628 657 IPR002110 GO:0005515
Prci9g1874 718 PANTHER CENTAURIN/ARF 1 715 IPR045258 GO:0005096
Prci9g1874 718 ProSiteProfiles Ankyrin repeat profile. 661 693 IPR002110 GO:0005515
Prci9g1874 718 Pfam BAR domain of APPL family 1 155 IPR004148 GO:0005515|GO:0005737
Prci9g1874 718 ProSiteProfiles PH domain profile. 214 350 IPR001849 -
Prci9g1874 718 Pfam Putative GTPase activating protein for Arf 424 554 IPR001164 GO:0005096
Prci9g1874 718 CDD ArfGap 424 547 - -
Prci9g1874 718 Gene3D Arf GTPase activating protein 401 561 IPR038508 -
Prci9g1874 718 SMART arf_gap_3 421 560 IPR001164 GO:0005096
Prci9g1874 718 Gene3D - 207 360 IPR011993 -
Prci9g1874 718 Coils Coil 150 170 - -
Prci9g1874 718 Pfam Ankyrin repeats (3 copies) 633 716 IPR002110 GO:0005515
Prci9g1874 718 SMART PH_update 215 352 IPR001849 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g1874 Prci-Chr9 30185370 30194431 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g1874 433 553 C2H2 Transcription Factor Family AT4G21160 40.984 9.61e-22 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g1874 K12489 - qsa:O6P43_023509 1004.97