Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g1873 ATGCCAAAAGTTCTACAAAGGATGTCGGAAGTACACGTCTTGGAGAGGGATATGATGGGGACATTGCTTTTGCAAGTGCCCTCGAAACTTTTGGGGGAGGGCACTGTGATCCACTCTTTGTTGCTTTGGGAGGTTGAGCACATGCTTAATGACCGGTTGCTACACATTCTCAATGTTGACATCCAAGATGTTAAGGAAGCTCGAAAGCGATTTGACAAAGCTTCTCTTGTATATGATCAGGCACGTGATAAATTTCTGTCATTGAGAAAGAGCACTAGGATGGATATTGCTAGTGCCATCGAAGAGGAATGGCACATTGCAAGAGATTCATTTGAGGAAGCCCGTTGCAATCTGGTTAGTGCTCTAAATAATGTTGAGGCCAAGAAGAGATTTGAATTTTTGGAGGCTGTCAGTGGAATTATGGATGCTCATCTTCGATACTTTCAACAGGGATATCAGCTATTGCATCAGATGGAACCTTTCATTACTGAGGTTTTGGCTTATGCACAGCAGTCAAGAGAAAGTTACAATACGGATCAGATCTCTCTAAATGAAAAAATGCAAGAGTACAAAAGACAAATTCATCAAGAAAGTAGATTGTCTTTAAATGGTCCCAATGGTTCTCCTGGAGACTGTGTACAGCCTTTTTCTAGGATATCAAATGAAGTGGTAGATGCAGTAAAAGAATCTGCTGCAAATGGGAAGGTTCAAATTATTCGGCAAGGATTTCTTTCAAAACGCTCATCCAATCTGAGGGGTGACTGGAAGAGAAGGTATTTTGTTCTTGATAGTCGAGGAATGCTGTTCTATTATCGCAAACCATGGAACTGGTCTCATAGCAGCAATCTACCATCTGTACAGAGAAATAATGCCACTGAAAATGGCTCTGGAATTCTGAGCCGGTGGCTTTCTTCTCATTATCATGGGGGTGTCCATGATGAACGATCTGTGGCACGTCATGCAGTGAACCTGCTTACATCAACAATTAAGGTTGATGCTGATCAGACAGATCTAAGATTTTGCTTCCGGATTATTTCACCAGTAAAGAACTATACATTGCAGGCAGAAAATGCAGTGGACCAGATGGATTGGATTGAAAAAATGACAGGAGTAATTGCTTCCTTGTTGAGTGTTCAGTCGGTAGAAATGCCTCTCACAGCTGACTCTGAAAGTGGTGGCTGTTCCTCTTCAAGTAAGATTGATATGCTGGAAAACTTTCAAGACGATGATCAACCAATGAGTAAGGAGTGTGCATCCAAGAACATCACTTCAAATAATCATTTGCGTGAATATAAAAGTTTTCAGTTGCATAAACAGAGTATTAGAGGTGAAAAACCAATTGATGTTCTTAGAAGGGTAGGTGGAAATGAGAGATGTGCTGATTGTGGTAAACCTGAACCAGACTGGGCATCCTTAAACCTCGGTATTCTCATATGCATAGAGTGTTCTGGCATTCATCGTAATCTTGGTGTACATATATCAAAAGTAAGATCACTGACTCTTGATGTGAAAGTCTGGGACCCTTCTGTCCTAACTATGTTTCAGTCACTGGGCAATCATTTTGCAAACTCAGTTTGGGAAGAAACATTGAATTCAGCAAGTGAAATGCAAGCTGATGATGCAAATGTTGAAAACAGATTATTCCGCGTGAGGAAACCAGAACATGATGATTCTATCTCATTAAAAGAGAGGTTCATTCATGCAAAGTATTCTGAGAAAATCTTTGTCGATCAGATAAAGGATAACAACCATCTCCTTTCAGTGGCGCAACAACTGTGGGAAAGTGTTTGCGCCAATGATAAGAAAGCAGTGTACCAGTATATTGTGAAGTCTGATCTGGATGTCAATGCTGTCTGTGGGCAAGAATATTTTGATGACGCTTTTGACATGCCTTCAAGCAATTCAAAATCTTCAGCCAAGAGTGAAAACCAACCAATAGAGGATATACTTGATGGTTCTACTGTGCTTCACCTGGCATGCCTGACTGCTGACATTGCCATGGTGGAGCTGCTCTTACAATATGGCGCAGACATTAATGCATCCGATTCAAGAGGTCGCACACCACTGCATTACTGTATTATCAGAGGGAAGAATGCAACTGCAAAATTGCTTCTGATAAGAGGGGCGAATCCACATGCGGCAGATGATGAAGGCAATACTCCTCTTAAACTTGCATCAGAATCCGCTTCTATTAGCAATGATGTTCTCGCCCTCATTACAAGATGA 2226 0.4128 MPKVLQRMSEVHVLERDMMGTLLLQVPSKLLGEGTVIHSLLLWEVEHMLNDRLLHILNVDIQDVKEARKRFDKASLVYDQARDKFLSLRKSTRMDIASAIEEEWHIARDSFEEARCNLVSALNNVEAKKRFEFLEAVSGIMDAHLRYFQQGYQLLHQMEPFITEVLAYAQQSRESYNTDQISLNEKMQEYKRQIHQESRLSLNGPNGSPGDCVQPFSRISNEVVDAVKESAANGKVQIIRQGFLSKRSSNLRGDWKRRYFVLDSRGMLFYYRKPWNWSHSSNLPSVQRNNATENGSGILSRWLSSHYHGGVHDERSVARHAVNLLTSTIKVDADQTDLRFCFRIISPVKNYTLQAENAVDQMDWIEKMTGVIASLLSVQSVEMPLTADSESGGCSSSSKIDMLENFQDDDQPMSKECASKNITSNNHLREYKSFQLHKQSIRGEKPIDVLRRVGGNERCADCGKPEPDWASLNLGILICIECSGIHRNLGVHISKVRSLTLDVKVWDPSVLTMFQSLGNHFANSVWEETLNSASEMQADDANVENRLFRVRKPEHDDSISLKERFIHAKYSEKIFVDQIKDNNHLLSVAQQLWESVCANDKKAVYQYIVKSDLDVNAVCGQEYFDDAFDMPSSNSKSSAKSENQPIEDILDGSTVLHLACLTADIAMVELLLQYGADINASDSRGRTPLHYCIIRGKNATAKLLLIRGANPHAADDEGNTPLKLASESASISNDVLALITR 741
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Prci9g1873 741 Gene3D Arfaptin homology (AH) domain/BAR domain 3 197 IPR027267 -
Prci9g1873 741 Pfam Putative GTPase activating protein for Arf 447 577 IPR001164 GO:0005096
Prci9g1873 741 SUPERFAMILY BAR/IMD domain-like 16 260 IPR027267 -
Prci9g1873 741 CDD ArfGap 447 570 - -
Prci9g1873 741 ProSiteProfiles PH domain profile. 237 373 IPR001849 -
Prci9g1873 741 Pfam BAR domain of APPL family 24 178 IPR004148 GO:0005515|GO:0005737
Prci9g1873 741 ProSiteProfiles Ankyrin repeat region circular profile. 684 716 - -
Prci9g1873 741 Coils Coil 64 84 - -
Prci9g1873 741 SMART arf_gap_3 444 583 IPR001164 GO:0005096
Prci9g1873 741 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 426 584 - -
Prci9g1873 741 SUPERFAMILY ArfGap/RecO-like zinc finger 444 577 IPR037278 -
Prci9g1873 741 ProSiteProfiles ARF GTPase-activating proteins domain profile. 444 583 IPR001164 GO:0005096
Prci9g1873 741 ProSiteProfiles Ankyrin repeat profile. 684 716 IPR002110 GO:0005515
Prci9g1873 741 ProSiteProfiles Ankyrin repeat region circular profile. 651 682 - -
Prci9g1873 741 Gene3D - 230 383 IPR011993 -
Prci9g1873 741 CDD PH_ACAP 240 377 - -
Prci9g1873 741 Pfam Ankyrin repeats (3 copies) 656 739 IPR002110 GO:0005515
Prci9g1873 741 Coils Coil 173 193 - -
Prci9g1873 741 PRINTS HIV Rev interacting protein signature 456 475 IPR001164 GO:0005096
Prci9g1873 741 PRINTS HIV Rev interacting protein signature 475 492 IPR001164 GO:0005096
Prci9g1873 741 PRINTS HIV Rev interacting protein signature 498 519 IPR001164 GO:0005096
Prci9g1873 741 ProSiteProfiles Ankyrin repeat profile. 651 683 IPR002110 GO:0005515
Prci9g1873 741 SMART ANK_2a 684 713 IPR002110 GO:0005515
Prci9g1873 741 SMART ANK_2a 651 680 IPR002110 GO:0005515
Prci9g1873 741 Gene3D Arf GTPase activating protein 424 584 IPR038508 -
Prci9g1873 741 SMART PH_update 238 375 IPR001849 -
Prci9g1873 741 PANTHER CENTAURIN/ARF 33 738 IPR045258 GO:0005096
Prci9g1873 741 Pfam PH domain 239 369 IPR001849 -
Prci9g1873 741 SUPERFAMILY Ankyrin repeat 596 728 IPR036770 -
Prci9g1873 741 Gene3D - 588 740 IPR036770 -
Prci9g1873 741 SUPERFAMILY PH domain-like 149 372 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Prci9g1873 Prci-Chr9 30185328 30194431 Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g1873 443 576 C2H2 Transcription Factor Family AT4G21160 39.259 9.10e-22 95.5
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g1873 K12489 - gmx:100792517 970.304