Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g1872 ATGATGGGGACATTGCTTTTGCAAGTGCCCTCGAAACTTTTGGGGGAGGGCACTGTGATCCACTCTTTGTTGCTTTGGGAGGTTGAGCACATGCTTAATGACCGGTTGCTACACATTCTCAATGTTGACATCCAAGATGTTAAGGAAGCTCGAAAGCGATTTGACAAAGCTTCTCTTGTATATGATCAGGCACGTGATAAATTTCTGTCATTGAGAAAGAGCACTAGGATGGATATTGCTAGTGCCATCGAAGAGGAATGGCACATTGCAAGAGATTCATTTGAGGAAGCCCGTTGCAATCTGGTTAGTGCTCTAAATAATGTTGAGGCCAAGAAGAGATTTGAATTTTTGGAGGCTGTCAGTGGAATTATGGATGCTCATCTTCGATACTTTCAACAGGGATATCAGCTATTGCATCAGATGGAACCTTTCATTACTGAGGTTTTGGCTTATGCACAGCAGTCAAGAGAAAGTTACAATACGGATCAGATCTCTCTAAATGAAAAAATGCAAGAGTACAAAAGACAAATTCATCAAGAAAGTAGATTGTCTTTAAATGGTCCCAATGGTTCTCCTGGAGACTGTGTACAGCCTTTTTCTAGGATATCAAATGAAGTGGTAGATGCAGTAAAAGAATCTGCTGCAAATGGGAAGGTTCAAATTATTCGGCAAGGATTTCTTTCAAAACGCTCATCCAATCTGAGGGGTGACTGGAAGAGAAGGTATTTTGTTCTTGATAGTCGAGGAATGCTGTTCTATTATCGCAAACCATGGAACTGGTCTCATAGCAGCAATCTACCATCTGTACAGAGAAATAATGCCACTGAAAATGGCTCTGGAATTCTGAGCCGGTGGCTTTCTTCTCATTATCATGGGGGTGTCCATGATGAACGATCTGTGGCACGTCATGCAGTGAACCTGCTTACATCAACAATTAAGGTTGATGCTGATCAGACAGATCTAAGATTTTGCTTCCGGATTATTTCACCAGTAAAGAACTATACATTGCAGGCAGAAAATGCAGTGGACCAGATGGATTGGATTGAAAAAATGACAGGAGTAATTGCTTCCTTGTTGAGTGTTCAGTCGGTAGAAATGCCTCTCACAGCTGACTCTGAAAGTGGTGGCTGTTCCTCTTCAAGTAAGATTGATATGCTGGAAAACTTTCAAGACGATGATCAACCAATGAGTAAGGAGTGTGCATCCAAGAACATCACTTCAAATAATCATTTGCGTGAATATAAAAGTTTTCAGTTGCATAAACAGAGTATTAGAGGTGAAAAACCAATTGATGTTCTTAGAAGGGTAGGTGGAAATGAGAGATGTGCTGATTGTGGTAAACCTGAACCAGACTGGGCATCCTTAAACCTCGGTATTCTCATATGCATAGAGTGTTCTGGCATTCATCGTAATCTTGGTGTACATATATCAAAAGTAAGATCACTGACTCTTGATGTGAAAGTCTGGGACCCTTCTGTCCTAACTATGTTTCAGTCACTGGGCAATCATTTTGCAAACTCAGTTTGGGAAGAAACATTGAATTCAGCAAGTGAAATGCAAGCTGATGATGCAAATGTTGAAAACAGATTATTCCGCGTGAGGAAACCAGAACATGATGATTCTATCTCATTAAAAGAGAGGTTCATTCATGCAAAGTATTCTGAGAAAATCTTTGTCGATCAGATAAAGGATAACAACCATCTCCTTTCAGTGGCGCAACAACTGTGGGAAAGTGTTTGCGCCAATGATAAGAAAGCAGTGTACCAGTATATTGTGAAGTCTGATCTGGATGTCAATGCTGTCTGTGGGCAAGAATATTTTGATGACGCTTTTGACATGCCTTCAAGCAATTCAAAATCTTCAGCCAAGAGTGAAAACCAACCAATAGAGGATATACTTGATGGTTCTACTGTGCTTCACCTGGCATGCCTGACTGCTGACATTGCCATGGTGGAGCTGCTCTTACAATATGGCGCAGACATTAATGCATCCGATTCAAGAGGTCGCACACCACTGCATTACTGTATTATCAGAGGGAAGAATGCAACTGCAAAATTGCTTCTGATAAGAGGGGCGAATCCACATGCGGCAGATGATGAAGGCAATACTCCTCTTAAACTTGCATCAGAATCCGCTTCTATTAGCAATGATGTTCTCGCCCTCATTACAAGATGA 2175 0.412 MMGTLLLQVPSKLLGEGTVIHSLLLWEVEHMLNDRLLHILNVDIQDVKEARKRFDKASLVYDQARDKFLSLRKSTRMDIASAIEEEWHIARDSFEEARCNLVSALNNVEAKKRFEFLEAVSGIMDAHLRYFQQGYQLLHQMEPFITEVLAYAQQSRESYNTDQISLNEKMQEYKRQIHQESRLSLNGPNGSPGDCVQPFSRISNEVVDAVKESAANGKVQIIRQGFLSKRSSNLRGDWKRRYFVLDSRGMLFYYRKPWNWSHSSNLPSVQRNNATENGSGILSRWLSSHYHGGVHDERSVARHAVNLLTSTIKVDADQTDLRFCFRIISPVKNYTLQAENAVDQMDWIEKMTGVIASLLSVQSVEMPLTADSESGGCSSSSKIDMLENFQDDDQPMSKECASKNITSNNHLREYKSFQLHKQSIRGEKPIDVLRRVGGNERCADCGKPEPDWASLNLGILICIECSGIHRNLGVHISKVRSLTLDVKVWDPSVLTMFQSLGNHFANSVWEETLNSASEMQADDANVENRLFRVRKPEHDDSISLKERFIHAKYSEKIFVDQIKDNNHLLSVAQQLWESVCANDKKAVYQYIVKSDLDVNAVCGQEYFDDAFDMPSSNSKSSAKSENQPIEDILDGSTVLHLACLTADIAMVELLLQYGADINASDSRGRTPLHYCIIRGKNATAKLLLIRGANPHAADDEGNTPLKLASESASISNDVLALITR 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g1872 724 ProSiteProfiles Ankyrin repeat region circular profile. 634 665 - -
Prci9g1872 724 SUPERFAMILY ArfGap/RecO-like zinc finger 427 560 IPR037278 -
Prci9g1872 724 PANTHER CENTAURIN/ARF 18 721 IPR045258 GO:0005096
Prci9g1872 724 SMART ANK_2a 634 663 IPR002110 GO:0005515
Prci9g1872 724 SMART ANK_2a 667 696 IPR002110 GO:0005515
Prci9g1872 724 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 409 567 - -
Prci9g1872 724 Pfam BAR domain of APPL family 11 161 IPR004148 GO:0005515|GO:0005737
Prci9g1872 724 ProSiteProfiles PH domain profile. 220 356 IPR001849 -
Prci9g1872 724 Coils Coil 47 67 - -
Prci9g1872 724 Gene3D Arfaptin homology (AH) domain/BAR domain 1 180 IPR027267 -
Prci9g1872 724 SUPERFAMILY PH domain-like 132 355 - -
Prci9g1872 724 ProSiteProfiles Ankyrin repeat profile. 667 699 IPR002110 GO:0005515
Prci9g1872 724 CDD ArfGap 430 553 - -
Prci9g1872 724 Gene3D Arf GTPase activating protein 407 567 IPR038508 -
Prci9g1872 724 SMART arf_gap_3 427 566 IPR001164 GO:0005096
Prci9g1872 724 ProSiteProfiles Ankyrin repeat region circular profile. 667 699 - -
Prci9g1872 724 Gene3D - 571 723 IPR036770 -
Prci9g1872 724 Coils Coil 156 176 - -
Prci9g1872 724 SUPERFAMILY BAR/IMD domain-like 11 243 IPR027267 -
Prci9g1872 724 SMART PH_update 221 358 IPR001849 -
Prci9g1872 724 CDD PH_ACAP 223 360 - -
Prci9g1872 724 Gene3D - 213 366 IPR011993 -
Prci9g1872 724 Pfam PH domain 222 352 IPR001849 -
Prci9g1872 724 PRINTS HIV Rev interacting protein signature 439 458 IPR001164 GO:0005096
Prci9g1872 724 PRINTS HIV Rev interacting protein signature 481 502 IPR001164 GO:0005096
Prci9g1872 724 PRINTS HIV Rev interacting protein signature 458 475 IPR001164 GO:0005096
Prci9g1872 724 ProSiteProfiles Ankyrin repeat profile. 634 666 IPR002110 GO:0005515
Prci9g1872 724 SUPERFAMILY Ankyrin repeat 579 711 IPR036770 -
Prci9g1872 724 Pfam Putative GTPase activating protein for Arf 430 560 IPR001164 GO:0005096
Prci9g1872 724 Pfam Ankyrin repeats (3 copies) 639 722 IPR002110 GO:0005515
Prci9g1872 724 ProSiteProfiles ARF GTPase-activating proteins domain profile. 427 566 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g1872 Prci-Chr9 30184962 30194431 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g1872 426 559 C2H2 Transcription Factor Family AT4G21160 39.259 8.31e-22 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g1872 K12489 - gmx:100792517 970.304