Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g1871 ATGCATTTCGCTAAACTTGATGATTCGCCAATGTTCCGGCAACAGCTGCAATGCTTGGAAGAAGGTGTAGATTCATTACGGGCGAGATGCCAAAAGTTCTACAAAGGATGTCGGAAGTACACGGAAGGTCTTGGAGAGGGATATGATGGGGACATTGCTTTTGCAAGTGCCCTCGAAACTTTTGGGGGAGGGCACTGTGATCCACTCTTTGTTGCTTTGGGAGGACCTGTTATGACCAAATTCACCATTGCTTTGAGAGAAATCGGCACCTATAAAGAAGTTTTACGGTCTCAGGTTGAGCACATGCTTAATGACCGGTTGCTACACATTCTCAATGTTGACATCCAAGATGTTAAGGAAGCTCGAAAGCGATTTGACAAAGCTTCTCTTGTATATGATCAGGCACGTGATAAATTTCTGTCATTGAGAAAGAGCACTAGGATGGATATTGCTAGTGCCATCGAAGAGGAATGGCACATTGCAAGAGATTCATTTGAGGAAGCCCGTTGCAATCTGGTTAGTGCTCTAAATAATGTTGAGGCCAAGAAGAGATTTGAATTTTTGGAGGCTGTCAGTGGAATTATGGATGCTCATCTTCGATACTTTCAACAGGGATATCAGCTATTGCATCAGATGGAACCTTTCATTACTGAGGTTTTGGCTTATGCACAGCAGTCAAGAGAAAGTTACAATACGGATCAGATCTCTCTAAATGAAAAAATGCAAGAGTACAAAAGACAAATTCATCAAGAAAGTAGATTGTCTTTAAATGGTCCCAATGGTTCTCCTGGAGACTGTGTACAGCCTTTTTCTAGGATATCAAATGAAGTGGTAGATGCAGTAAAAGAATCTGCTGCAAATGGGAAGGTTCAAATTATTCGGCAAGGATTTCTTTCAAAACGCTCATCCAATCTGAGGGGTGACTGGAAGAGAAGGTATTTTGTTCTTGATAGTCGAGGAATGCTGTTCTATTATCGCAAACCATGGAACTGGTCTCATAGCAGCAATCTACCATCTGTACAGAGAAATAATGCCACTGAAAATGGCTCTGGAATTCTGAGCCGGTGGCTTTCTTCTCATTATCATGGGGGTGTCCATGATGAACGATCTGTGGCACGTCATGCAGTGAACCTGCTTACATCAACAATTAAGGTTGATGCTGATCAGACAGATCTAAGATTTTGCTTCCGGATTATTTCACCAGTAAAGAACTATACATTGCAGGCAGAAAATGCAGTGGACCAGATGGATTGGATTGAAAAAATGACAGGAGTAATTGCTTCCTTGTTGAGTGTTCAGTCGGTAGAAATGCCTCTCACAGCTGACTCTGAAAGTGGTGGCTGTTCCTCTTCAAGTAAGATTGATATGCTGGAAAACTTTCAAGACGATGATCAACCAATGAGTAAGGAGTGTGCATCCAAGAACATCACTTCAAATAATCATTTGCGTGAATATAAAAGTTTTCAGTTGCATAAACAGAGTATTAGAGGTGAAAAACCAATTGATGTTCTTAGAAGGGTAGGTGGAAATGAGAGATGTGCTGATTGTGGTAAACCTGAACCAGACTGGGCATCCTTAAACCTCGGTATTCTCATATGCATAGAGTGTTCTGGCATTCATCGTAATCTTGGTGTACATATATCAAAAGTAAGATCACTGACTCTTGATGTGAAAGTCTGGGACCCTTCTGTCCTAACTATGTTTCAGTCACTGGGCAATCATTTTGCAAACTCAGTTTGGGAAGAAACATTGAATTCAGCAAGTGAAATGCAAGCTGATGATGCAAATGTTGAAAACAGATTATTCCGCGTGAGGAAACCAGAACATGATGATTCTATCTCATTAAAAGAGAGGTTCATTCATGCAAAGTATTCTGAGAAAATCTTTGTCGATCAGATAAAGGATAACAACCATCTCCTTTCAGTGGCGCAACAACTGTGGGAAAGTGTTTGCGCCAATGATAAGAAAGCAGTGTACCAGTATATTGTGAAGTCTGATCTGGATGTCAATGCTGTCTGTGGGCAAGAATATTTTGATGACGCTTTTGACATGCCTTCAAGCAATTCAAAATCTTCAGCCAAGAGTGAAAACCAACCAATAGAGGATATACTTGATGGTTCTACTGTGCTTCACCTGGCATGCCTGACTGCTGACATTGCCATGGTGGAGCTGCTCTTACAATATGGCGCAGACATTAATGCATCCGATTCAAGAGGTCGCACACCACTGCATTACTGTATTATCAGAGGGAAGAATGCAACTGCAAAATTGCTTCTGATAAGAGGGGCGAATCCACATGCGGCAGATGATGAAGGCAATACTCCTCTTAAACTTGCATCAGAATCCGCTTCTATTAGCAATGATGTTCTCGCCCTCATTACAAGATGA 2388 0.415 MHFAKLDDSPMFRQQLQCLEEGVDSLRARCQKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHCDPLFVALGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLHILNVDIQDVKEARKRFDKASLVYDQARDKFLSLRKSTRMDIASAIEEEWHIARDSFEEARCNLVSALNNVEAKKRFEFLEAVSGIMDAHLRYFQQGYQLLHQMEPFITEVLAYAQQSRESYNTDQISLNEKMQEYKRQIHQESRLSLNGPNGSPGDCVQPFSRISNEVVDAVKESAANGKVQIIRQGFLSKRSSNLRGDWKRRYFVLDSRGMLFYYRKPWNWSHSSNLPSVQRNNATENGSGILSRWLSSHYHGGVHDERSVARHAVNLLTSTIKVDADQTDLRFCFRIISPVKNYTLQAENAVDQMDWIEKMTGVIASLLSVQSVEMPLTADSESGGCSSSSKIDMLENFQDDDQPMSKECASKNITSNNHLREYKSFQLHKQSIRGEKPIDVLRRVGGNERCADCGKPEPDWASLNLGILICIECSGIHRNLGVHISKVRSLTLDVKVWDPSVLTMFQSLGNHFANSVWEETLNSASEMQADDANVENRLFRVRKPEHDDSISLKERFIHAKYSEKIFVDQIKDNNHLLSVAQQLWESVCANDKKAVYQYIVKSDLDVNAVCGQEYFDDAFDMPSSNSKSSAKSENQPIEDILDGSTVLHLACLTADIAMVELLLQYGADINASDSRGRTPLHYCIIRGKNATAKLLLIRGANPHAADDEGNTPLKLASESASISNDVLALITR 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g1871 795 ProSiteProfiles Ankyrin repeat profile. 705 737 IPR002110 GO:0005515
Prci9g1871 795 SMART 5bar 2 218 IPR004148 GO:0005515|GO:0005737
Prci9g1871 795 SMART ANK_2a 705 734 IPR002110 GO:0005515
Prci9g1871 795 SMART ANK_2a 738 767 IPR002110 GO:0005515
Prci9g1871 795 SUPERFAMILY Ankyrin repeat 650 782 IPR036770 -
Prci9g1871 795 Pfam PH domain 293 423 IPR001849 -
Prci9g1871 795 CDD BAR_SFC_plant 15 215 IPR035670 -
Prci9g1871 795 PANTHER CENTAURIN/ARF 3 792 IPR045258 GO:0005096
Prci9g1871 795 Pfam Putative GTPase activating protein for Arf 501 631 IPR001164 GO:0005096
Prci9g1871 795 SMART arf_gap_3 498 637 IPR001164 GO:0005096
Prci9g1871 795 Pfam BAR domain of APPL family 6 232 IPR004148 GO:0005515|GO:0005737
Prci9g1871 795 SUPERFAMILY BAR/IMD domain-like 6 314 IPR027267 -
Prci9g1871 795 Gene3D - 641 794 IPR036770 -
Prci9g1871 795 ProSiteProfiles ARF GTPase-activating proteins domain profile. 498 637 IPR001164 GO:0005096
Prci9g1871 795 ProSiteProfiles Ankyrin repeat profile. 738 770 IPR002110 GO:0005515
Prci9g1871 795 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 480 638 - -
Prci9g1871 795 ProSiteProfiles Ankyrin repeat region circular profile. 705 736 - -
Prci9g1871 795 SMART PH_update 292 429 IPR001849 -
Prci9g1871 795 SUPERFAMILY ArfGap/RecO-like zinc finger 498 631 IPR037278 -
Prci9g1871 795 Gene3D - 284 437 IPR011993 -
Prci9g1871 795 Gene3D Arf GTPase activating protein 478 638 IPR038508 -
Prci9g1871 795 SUPERFAMILY PH domain-like 203 426 - -
Prci9g1871 795 ProSiteProfiles PH domain profile. 291 427 IPR001849 -
Prci9g1871 795 Pfam Ankyrin repeats (3 copies) 710 793 IPR002110 GO:0005515
Prci9g1871 795 ProSiteProfiles Ankyrin repeat region circular profile. 738 770 - -
Prci9g1871 795 CDD PH_ACAP 294 431 - -
Prci9g1871 795 Coils Coil 227 247 - -
Prci9g1871 795 CDD ArfGap 501 624 - -
Prci9g1871 795 Coils Coil 118 138 - -
Prci9g1871 795 Gene3D Arfaptin homology (AH) domain/BAR domain 4 251 IPR027267 -
Prci9g1871 795 PRINTS HIV Rev interacting protein signature 510 529 IPR001164 GO:0005096
Prci9g1871 795 PRINTS HIV Rev interacting protein signature 552 573 IPR001164 GO:0005096
Prci9g1871 795 PRINTS HIV Rev interacting protein signature 529 546 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g1871 Prci-Chr9 30184787 30194431 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g1871 497 630 C2H2 Transcription Factor Family AT4G21160 39.259 1.58e-21 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g1871 K12489 - qsa:O6P43_023509 1142.87