Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g1870 ATGCATTTCGCTAAACTTGATGATTCGCCAATGTTCCGGCAACAGTTAACTCGTTGCGAAGGGGTGCTTTTGAATGTCAAACACCTCGAAAATGTGTCTTATGGGAGAGCTGCGCACTTATGGAACGCTTATTTTGAATGGCTATGGATGCAGCTGCAATGCTTGGAAGAAGGTGTAGATTCATTACGGGCGAGATGCCAAAAGTTCTACAAAGGATGTCGGAAGTACACGGAAGGTCTTGGAGAGGGATATGATGGGGACATTGCTTTTGCAAGTGCCCTCGAAACTTTTGGGGGAGGGCACTGTGATCCACTCTTTGTTGCTTTGGGAGGACCTGTTATGACCAAATTCACCATTGCTTTGAGAGAAATCGGCACCTATAAAGAAGTTTTACGGTCTCAGGTTGAGCACATGCTTAATGACCGGTTGCTACACATTCTCAATGTTGACATCCAAGATGTTAAGGAAGCTCGAAAGCGATTTGACAAAGCTTCTCTTGTATATGATCAGGCACGTGATAAATTTCTGTCATTGAGAAAGAGCACTAGGATGGATATTGCTAGTGCCATCGAAGAGGAATGGCACATTGCAAGAGATTCATTTGAGGAAGCCCGTTGCAATCTGGTTAGTGCTCTAAATAATGTTGAGGCCAAGAAGAGATTTGAATTTTTGGAGGCTGTCAGTGGAATTATGGATGCTCATCTTCGATACTTTCAACAGGGATATCAGCTATTGCATCAGATGGAACCTTTCATTACTGAGGTTTTGGCTTATGCACAGCAGTCAAGAGAAAGTTACAATACGGATCAGATCTCTCTAAATGAAAAAATGCAAGAGTACAAAAGACAAATTCATCAAGAAAGTAGATTGTCTTTAAATGGTCCCAATGGTTCTCCTGGAGACTGTGTACAGCCTTTTTCTAGGATATCAAATGAAGTGGTAGATGCAGTAAAAGAATCTGCTGCAAATGGGAAGGTTCAAATTATTCGGCAAGGATTTCTTTCAAAACGCTCATCCAATCTGAGGGGTGACTGGAAGAGAAGGTATTTTGTTCTTGATAGTCGAGGAATGCTGTTCTATTATCGCAAACCATGGAACTGGTCTCATAGCAGCAATCTACCATCTGTACAGAGAAATAATGCCACTGAAAATGGCTCTGGAATTCTGAGCCGGTGGCTTTCTTCTCATTATCATGGGGGTGTCCATGATGAACGATCTGTGGCACGTCATGCAGTGAACCTGCTTACATCAACAATTAAGGTTGATGCTGATCAGACAGATCTAAGATTTTGCTTCCGGATTATTTCACCAGTAAAGAACTATACATTGCAGGCAGAAAATGCAGTGGACCAGATGGATTGGATTGAAAAAATGACAGGAGTAATTGCTTCCTTGTTGAGTGTTCAGTCGGTAGAAATGCCTCTCACAGCTGACTCTGAAAGTGGTGGCTGTTCCTCTTCAAGTAAGATTGATATGCTGGAAAACTTTCAAGACGATGATCAACCAATGAGTAAGGAGTGTGCATCCAAGAACATCACTTCAAATAATCATTTGCGTGAATATAAAAGTTTTCAGTTGCATAAACAGAGTATTAGAGGTGAAAAACCAATTGATGTTCTTAGAAGGGTAGGTGGAAATGAGAGATGTGCTGATTGTGGTAAACCTGAACCAGACTGGGCATCCTTAAACCTCGGTATTCTCATATGCATAGAGTGTTCTGGCATTCATCGTAATCTTGGTGTACATATATCAAAAGTAAGATCACTGACTCTTGATGTGAAAGTCTGGGACCCTTCTGTCCTAACTATGTTTCAGTCACTGGGCAATCATTTTGCAAACTCAGTTTGGGAAGAAACATTGAATTCAGCAAGTGAAATGCAAGCTGATGATGCAAATGTTGAAAACAGATTATTCCGCGTGAGGAAACCAGAACATGATGATTCTATCTCATTAAAAGAGAGGTTCATTCATGCAAAGTATTCTGAGAAAATCTTTGTCGATCAGATAAAGGATAACAACCATCTCCTTTCAGTGGCGCAACAACTGTGGGAAAGTGTTTGCGCCAATGATAAGAAAGCAGTGTACCAGTATATTGTGAAGTCTGATCTGGATGTCAATGCTGTCTGTGGGCAAGAATATTTTGATGACGCTTTTGACATGCCTTCAAGCAATTCAAAATCTTCAGCCAAGAGTGAAAACCAACCAATAGAGGATATACTTGATGGTTCTACTGTGCTTCACCTGGCATGCCTGACTGCTGACATTGCCATGGTGGAGCTGCTCTTACAATATGGCGCAGACATTAATGCATCCGATTCAAGAGGTCGCACACCACTGCATTACTGTATTATCAGAGGGAAGAATGCAACTGCAAAATTGCTTCTGATAAGAGGGGCGAATCCACATGCGGCAGATGATGAAGGCAATACTCCTCTTAAACTTGCATCAGAATCCGCTTCTATTAGCAATGATGTTCTCGCCCTCATTACAAGATGA 2496 0.4163 MHFAKLDDSPMFRQQLTRCEGVLLNVKHLENVSYGRAAHLWNAYFEWLWMQLQCLEEGVDSLRARCQKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHCDPLFVALGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLHILNVDIQDVKEARKRFDKASLVYDQARDKFLSLRKSTRMDIASAIEEEWHIARDSFEEARCNLVSALNNVEAKKRFEFLEAVSGIMDAHLRYFQQGYQLLHQMEPFITEVLAYAQQSRESYNTDQISLNEKMQEYKRQIHQESRLSLNGPNGSPGDCVQPFSRISNEVVDAVKESAANGKVQIIRQGFLSKRSSNLRGDWKRRYFVLDSRGMLFYYRKPWNWSHSSNLPSVQRNNATENGSGILSRWLSSHYHGGVHDERSVARHAVNLLTSTIKVDADQTDLRFCFRIISPVKNYTLQAENAVDQMDWIEKMTGVIASLLSVQSVEMPLTADSESGGCSSSSKIDMLENFQDDDQPMSKECASKNITSNNHLREYKSFQLHKQSIRGEKPIDVLRRVGGNERCADCGKPEPDWASLNLGILICIECSGIHRNLGVHISKVRSLTLDVKVWDPSVLTMFQSLGNHFANSVWEETLNSASEMQADDANVENRLFRVRKPEHDDSISLKERFIHAKYSEKIFVDQIKDNNHLLSVAQQLWESVCANDKKAVYQYIVKSDLDVNAVCGQEYFDDAFDMPSSNSKSSAKSENQPIEDILDGSTVLHLACLTADIAMVELLLQYGADINASDSRGRTPLHYCIIRGKNATAKLLLIRGANPHAADDEGNTPLKLASESASISNDVLALITR 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g1870 831 Coils Coil 263 283 - -
Prci9g1870 831 SMART PH_update 328 465 IPR001849 -
Prci9g1870 831 CDD PH_ACAP 330 467 - -
Prci9g1870 831 Pfam PH domain 329 459 IPR001849 -
Prci9g1870 831 CDD ArfGap 537 660 - -
Prci9g1870 831 Gene3D Arfaptin homology (AH) domain/BAR domain 47 287 IPR027267 -
Prci9g1870 831 SUPERFAMILY PH domain-like 239 462 - -
Prci9g1870 831 SUPERFAMILY Ankyrin repeat 686 818 IPR036770 -
Prci9g1870 831 Coils Coil 154 174 - -
Prci9g1870 831 PANTHER CENTAURIN/ARF 3 828 IPR045258 GO:0005096
Prci9g1870 831 SMART ANK_2a 774 803 IPR002110 GO:0005515
Prci9g1870 831 SMART ANK_2a 741 770 IPR002110 GO:0005515
Prci9g1870 831 Pfam Ankyrin repeats (3 copies) 746 829 IPR002110 GO:0005515
Prci9g1870 831 Gene3D - 679 830 IPR036770 -
Prci9g1870 831 ProSiteProfiles PH domain profile. 327 463 IPR001849 -
Prci9g1870 831 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 516 674 - -
Prci9g1870 831 Gene3D - 320 473 IPR011993 -
Prci9g1870 831 ProSiteProfiles ARF GTPase-activating proteins domain profile. 534 673 IPR001164 GO:0005096
Prci9g1870 831 SUPERFAMILY BAR/IMD domain-like 51 350 IPR027267 -
Prci9g1870 831 Pfam BAR domain of APPL family 51 268 IPR004148 GO:0005515|GO:0005737
Prci9g1870 831 SMART arf_gap_3 534 673 IPR001164 GO:0005096
Prci9g1870 831 Gene3D Arf GTPase activating protein 514 674 IPR038508 -
Prci9g1870 831 ProSiteProfiles Ankyrin repeat profile. 774 806 IPR002110 GO:0005515
Prci9g1870 831 ProSiteProfiles Ankyrin repeat profile. 741 773 IPR002110 GO:0005515
Prci9g1870 831 Pfam Putative GTPase activating protein for Arf 537 667 IPR001164 GO:0005096
Prci9g1870 831 PRINTS HIV Rev interacting protein signature 546 565 IPR001164 GO:0005096
Prci9g1870 831 PRINTS HIV Rev interacting protein signature 588 609 IPR001164 GO:0005096
Prci9g1870 831 PRINTS HIV Rev interacting protein signature 565 582 IPR001164 GO:0005096
Prci9g1870 831 ProSiteProfiles Ankyrin repeat region circular profile. 774 806 - -
Prci9g1870 831 SUPERFAMILY ArfGap/RecO-like zinc finger 534 667 IPR037278 -
Prci9g1870 831 CDD BAR_SFC_plant 51 251 IPR035670 -
Prci9g1870 831 ProSiteProfiles Ankyrin repeat region circular profile. 741 772 - -
Prci9g1870 831 SMART 5bar 35 254 IPR004148 GO:0005515|GO:0005737
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g1870 Prci-Chr9 30184786 30194431 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g1870 533 666 C2H2 Transcription Factor Family AT4G21160 39.259 1.78e-21 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g1870 K12489 - qsa:O6P43_023509 1124.77