Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g1869 ATGCATTTCGCTAAACTTGATGATTCGCCAATGTTCCGGCAACAGTTAACTCGTTGCGAAGGGGTGCTTTTGAATGTCAAACACCTCGAAAATGTGTCTTATGGGAGAGCTGCGCACTTATGGAACGCTTATTTTGAATGGCTATGGATGCAGCTGCAATGCTTGGAAGAAGGTGTAGATTCATTACGGGCGAGATGCCAAAAGTTCTACAAAGGATGTCGGAAGTACACGGAAGGTCTTGGAGAGGGATATGATGGGGACATTGCTTTTGCAAGTGCCCTCGAAACTTTTGGGGGAGGGCACTGTGATCCACTCTTTGTTGCTTTGGGAGGACCTGTTATGACCAAATTCACCATTGCTTTGAGAGAAATCGGCACCTATAAAGAAGTTTTACGGTCTCAGGTTGAGCACATGCTTAATGACCGGTTGCTACACATTCTCAATGTTGACATCCAAGATGTTAAGGAAGCTCGAAAGCGATTTGACAAAGCTTCTCTTGTATATGATCAGGCACGTGATAAATTTCTGTCATTGAGAAAGAGCACTAGGATGGATATTGCTAGTGCCATCGAAGAGGAATGGCACATTGCAAGAGATTCATTTGAGGAAGCCCGTTGCAATCTGGTTAGTGCTCTAAATAATGTTGAGGCCAAGAAGAGATTTGAATTTTTGGAGGCTGTCAGTGGAATTATGGATGCTCATCTTCGATACTTTCAACAGGGATATCAGCTATTGCATCAGATGGAACCTTTCATTACTGAGGTTTTGGCTTATGCACAGCAGTCAAGAGAAAGTTACAATACGGATCAGATCTCTCTAAATGAAAAAATGCAAGAGTACAAAAGACAAATTCATCAAGAAAGTAGATTGTCTTTAAATGGTCCCAATGGTTCTCCTGGAGACTGTGTACAGCCTTTTTCTAGGATATCAAATGAAGTGGTAGATGCAGTAAAAGAATCTGCTGCAAATGGGAAGGTTCAAATTATTCGGCAAGGATTTCTTTCAAAACGCTCATCCAATCTGAGGGGTGACTGGAAGAGAAGGTATTTTGTTCTTGATAGTCGAGGAATGCTGTTCTATTATCGCAAACCATGGAACTGGTCTCATAGCAGCAATCTACCATCTGTACAGAGAAATAATGCCACTGAAAATGGCTCTGGAATTCTGAGCCGGTGGCTTTCTTCTCATTATCATGGGGGTGTCCATGATGAACGATCTGTGGCACGTCATGCAGTGAACCTGCTTACATCAACAATTAAGGTTGATGCTGATCAGACAGATCTAAGATTTTGCTTCCGGATTATTTCACCAGTAAAGAACTATACATTGCAGGCAGAAAATGCAGTGGACCAGATGGATTGGATTGAAAAAATGACAGGAGTAATTGCTTCCTTGTTGAGTGTTCAGTCGGTAGAAATGCCTCTCACAGCTGACTCTGAAAGTGGTGGCTGTTCCTCTTCAAGTAAGATTGATATGCTGGAAAACTTTCAAGACGATGATCAACCAATGAGTAAGGAGTGTGCATCCAAGAACATCACTTCAAATAATCATTTGCGTGAATATAAAAGTTTTCAGTTGCATAAACAGAGTATTAGAGGTGAAAAACCAATTGATGTTCTTAGAAGGGTAGGTGGAAATGAGAGATGTGCTGATTGTGGTAAACCTGAACCAGACTGGGCATCCTTAAACCTCGGTATTCTCATATGCATAGAGTGTTCTGGCATTCATCGTAATCTTGGTGTACATATATCAAAAGTAAGATCACTGACTCTTGATGTGAAAGTCTGGGACCCTTCTGTCCTAACTATGTTTCAGTCACTGGGCAATCATTTTGCAAACTCAGTTTGGGAAGAAACATTGAATTCAGCAAGTGAAATGCAAGCTGATGATGCAAATGTTGAAAACAGATTATTCCGCGTGAGGAAACCAGAACATGATGATTCTATCTCATTAAAAGAGAGGTTCATTCATGCAAAGATAAAGGATAACAACCATCTCCTTTCAGTGGCGCAACAACTGTGGGAAAGTGTTTGCGCCAATGATAAGAAAGCAGTGTACCAGTATATTGTGAAGTCTGATCTGGATGTCAATGCTGTCTGTGGGCAAGAATATTTTGATGACGCTTTTGACATGCCTTCAAGCAATTCAAAATCTTCAGCCAAGAGTGAAAACCAACCAATAGAGGATATACTTGATGGTTCTACTGTGCTTCACCTGGCATGCCTGACTGCTGACATTGCCATGGTGGAGCTGCTCTTACAATATGGCGCAGACATTAATGCATCCGATTCAAGAGGTCGCACACCACTGCATTACTGTATTATCAGAGGGAAGAATGCAACTGCAAAATTGCTTCTGATAAGAGGGGCGAATCCACATGCGGCAGATGATGAAGGCAATACTCCTCTTAAACTTGCATCAGAATCCGCTTCTATTAGCAATGATGTTCTCGCCCTCATTACAAGATGA 2469 0.4172 MHFAKLDDSPMFRQQLTRCEGVLLNVKHLENVSYGRAAHLWNAYFEWLWMQLQCLEEGVDSLRARCQKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHCDPLFVALGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLHILNVDIQDVKEARKRFDKASLVYDQARDKFLSLRKSTRMDIASAIEEEWHIARDSFEEARCNLVSALNNVEAKKRFEFLEAVSGIMDAHLRYFQQGYQLLHQMEPFITEVLAYAQQSRESYNTDQISLNEKMQEYKRQIHQESRLSLNGPNGSPGDCVQPFSRISNEVVDAVKESAANGKVQIIRQGFLSKRSSNLRGDWKRRYFVLDSRGMLFYYRKPWNWSHSSNLPSVQRNNATENGSGILSRWLSSHYHGGVHDERSVARHAVNLLTSTIKVDADQTDLRFCFRIISPVKNYTLQAENAVDQMDWIEKMTGVIASLLSVQSVEMPLTADSESGGCSSSSKIDMLENFQDDDQPMSKECASKNITSNNHLREYKSFQLHKQSIRGEKPIDVLRRVGGNERCADCGKPEPDWASLNLGILICIECSGIHRNLGVHISKVRSLTLDVKVWDPSVLTMFQSLGNHFANSVWEETLNSASEMQADDANVENRLFRVRKPEHDDSISLKERFIHAKIKDNNHLLSVAQQLWESVCANDKKAVYQYIVKSDLDVNAVCGQEYFDDAFDMPSSNSKSSAKSENQPIEDILDGSTVLHLACLTADIAMVELLLQYGADINASDSRGRTPLHYCIIRGKNATAKLLLIRGANPHAADDEGNTPLKLASESASISNDVLALITR 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g1869 822 SMART arf_gap_3 534 655 IPR001164 GO:0005096
Prci9g1869 822 Pfam Ankyrin repeats (3 copies) 737 820 IPR002110 GO:0005515
Prci9g1869 822 ProSiteProfiles Ankyrin repeat profile. 765 797 IPR002110 GO:0005515
Prci9g1869 822 PRINTS HIV Rev interacting protein signature 546 565 IPR001164 GO:0005096
Prci9g1869 822 PRINTS HIV Rev interacting protein signature 588 609 IPR001164 GO:0005096
Prci9g1869 822 PRINTS HIV Rev interacting protein signature 565 582 IPR001164 GO:0005096
Prci9g1869 822 Coils Coil 263 283 - -
Prci9g1869 822 SMART PH_update 328 465 IPR001849 -
Prci9g1869 822 Gene3D - 320 473 IPR011993 -
Prci9g1869 822 ProSiteProfiles Ankyrin repeat region circular profile. 765 797 - -
Prci9g1869 822 SMART ANK_2a 732 761 IPR002110 GO:0005515
Prci9g1869 822 SMART ANK_2a 765 794 IPR002110 GO:0005515
Prci9g1869 822 CDD PH_ACAP 330 467 - -
Prci9g1869 822 SUPERFAMILY PH domain-like 239 462 - -
Prci9g1869 822 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 516 672 - -
Prci9g1869 822 Coils Coil 154 174 - -
Prci9g1869 822 Gene3D Arf GTPase activating protein 514 670 IPR038508 -
Prci9g1869 822 ProSiteProfiles PH domain profile. 327 463 IPR001849 -
Prci9g1869 822 Pfam PH domain 329 459 IPR001849 -
Prci9g1869 822 CDD ArfGap 537 659 - -
Prci9g1869 822 Pfam Putative GTPase activating protein for Arf 537 633 IPR001164 GO:0005096
Prci9g1869 822 Pfam BAR domain of APPL family 51 268 IPR004148 GO:0005515|GO:0005737
Prci9g1869 822 ProSiteProfiles Ankyrin repeat region circular profile. 732 763 - -
Prci9g1869 822 SUPERFAMILY BAR/IMD domain-like 51 350 IPR027267 -
Prci9g1869 822 PANTHER CENTAURIN/ARF 3 819 IPR045258 GO:0005096
Prci9g1869 822 Gene3D - 671 821 IPR036770 -
Prci9g1869 822 SUPERFAMILY ArfGap/RecO-like zinc finger 534 661 IPR037278 -
Prci9g1869 822 ProSiteProfiles ARF GTPase-activating proteins domain profile. 534 662 IPR001164 GO:0005096
Prci9g1869 822 ProSiteProfiles Ankyrin repeat profile. 732 764 IPR002110 GO:0005515
Prci9g1869 822 CDD BAR_SFC_plant 51 251 IPR035670 -
Prci9g1869 822 SUPERFAMILY Ankyrin repeat 678 809 IPR036770 -
Prci9g1869 822 SMART 5bar 35 254 IPR004148 GO:0005515|GO:0005737
Prci9g1869 822 Gene3D Arfaptin homology (AH) domain/BAR domain 47 287 IPR027267 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g1869 Prci-Chr9 30184785 30194431 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g1869 533 647 C2H2 Transcription Factor Family AT4G21160 43.590 3.08e-21 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g1869 K12489 - qsa:O6P43_023509 1106.28