Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g1868 ATGCATTTCGCTAAACTTGATGATTCGCCAATGTTCCGGCAACAGTTAACTCGTTGCGAAGGGGTGCTTTTGAATGTCAAACACCTCGAAAATGTGTCTTATGGGAGAGCTGCGCACTTATGGAACGCTTATTTTGAATGGCTATGGATGCAGCTGCAATGCTTGGAAGAAGGTGTAGATTCATTACGGGCGAGATGCCAAAAGTTCTACAAAGGATGTCGGAAGTACACGGAAGGTCTTGGAGAGGGATATGATGGGGACATTGCTTTTGCAAGTGCCCTCGAAACTTTTGGGGGAGGGCACTGTGATCCACTCTTTGTTGCTTTGGGAGGACCTGTTATGACCAAATTCACCATTGCTTTGAGAGAAATCGGCACCTATAAAGAAGTTTTACGGTCTCAGGTTGAGCACATGCTTAATGACCGGTTGCTACACATTCTCAATGTTGACATCCAAGATGTTAAGGAAGCTCGAAAGCGATTTGACAAAGCTTCTCTTGTATATGATCAGGCACGTGATAAATTTCTGTCATTGAGAAAGAGCACTAGGATGGATATTGCTAGTGCCATCGAAGAGGAATGGCACATTGCAAGAGATTCATTTGAGGAAGCCCGTTGCAATCTGGTTAGTGCTCTAAATAATGTTGAGGCCAAGAAGAGATTTGAATTTTTGGAGGCTGTCAGTGGAATTATGGATGCTCATCTTCGATACTTTCAACAGGGATATCAGCTATTGCATCAGATGGAACCTTTCATTACTGAGGTTTTGGCTTATGCACAGCAGTCAAGAGAAAGTTACAATACGGATCAGATCTCTCTAAATGAAAAAATGCAAGAGTACAAAAGACAAATTCATCAAGAAAGTAGATTGTCTTTAAATGGTCCCAATGGTTCTCCTGGAGACTGTGTACAGCCTTTTTCTAGGATATCAAATGAAGTGGTAGATGCAGTAAAAGAATCTGCTGCAAATGGGAAGGTTCAAATTATTCGGCAAGGATTTCTTTCAAAACGCTCATCCAATCTGAGGGGTGACTGGAAGAGAAGGTATTTTGTTCTTGATAGTCGAGGAATGCTGTTCTATTATCGCAAACCATGGAACTGGTCTCATAGCAGCAATCTACCATCTGTACAGAGAAATAATGCCACTGAAAATGGCTCTGGAATTCTGAGCCGGTGGCTTTCTTCTCATTATCATGGGGGTGTCCATGATGAACGATCTGTGGCACGTCATGCAGTGAACCTGCTTACATCAACAATTAAGGTTGATGCTGATCAGACAGATCTAAGATTTTGCTTCCGGATTATTTCACCAGTAAAGAACTATACATTGCAGGCAGAAAATGCAGTGGACCAGATGGATTGGATTGAAAAAATGACAGGAGTAATTGCTTCCTTGTTGAGTGTTCAGTCGGTAGAAATGCCTCTCACAGCTGACTCTGAAAGTGGTGGCTGTTCCTCTTCAAGTAAGATTGATATGCTGGAAAACTTTCAAGACGATGATCAACCAATGAGTAAGGAGTGTGCATCCAAGAACATCACTTCAAATAATCATTTGCGTGAATATAAAAGTTTTCAGTTGCATAAACAGAGTATTAGAGGTGAAAAACCAATTGATGTTCTTAGAAGGGTAGGTGGAAATGAGAGATGTGCTGATTGTGGTAAACCTGAACCAGACTGGGCATCCTTAAACCTCGGTATTCTCATATGCATAGAGTGTTCTGGCATTCATCGTAATCTTGGTGTACATATATCAAAAGTAAGATCACTGACTCTTGATGTGAAAGTCTGGGACCCTTCTGTCCTAACTATGTTTCAGTCACTGGGCAATCATTTTGCAAACTCAGTTTGGGAAGAAACATTGAATTCAGCAAGTGAAATGCAAGCTGATGATGCAAATGTTGATATTCTGAGAAAATCTTTGTCGATCAGATAA 1932 0.4125 MHFAKLDDSPMFRQQLTRCEGVLLNVKHLENVSYGRAAHLWNAYFEWLWMQLQCLEEGVDSLRARCQKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHCDPLFVALGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLHILNVDIQDVKEARKRFDKASLVYDQARDKFLSLRKSTRMDIASAIEEEWHIARDSFEEARCNLVSALNNVEAKKRFEFLEAVSGIMDAHLRYFQQGYQLLHQMEPFITEVLAYAQQSRESYNTDQISLNEKMQEYKRQIHQESRLSLNGPNGSPGDCVQPFSRISNEVVDAVKESAANGKVQIIRQGFLSKRSSNLRGDWKRRYFVLDSRGMLFYYRKPWNWSHSSNLPSVQRNNATENGSGILSRWLSSHYHGGVHDERSVARHAVNLLTSTIKVDADQTDLRFCFRIISPVKNYTLQAENAVDQMDWIEKMTGVIASLLSVQSVEMPLTADSESGGCSSSSKIDMLENFQDDDQPMSKECASKNITSNNHLREYKSFQLHKQSIRGEKPIDVLRRVGGNERCADCGKPEPDWASLNLGILICIECSGIHRNLGVHISKVRSLTLDVKVWDPSVLTMFQSLGNHFANSVWEETLNSASEMQADDANVDILRKSLSIR 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g1868 643 Gene3D Arfaptin homology (AH) domain/BAR domain 47 287 IPR027267 -
Prci9g1868 643 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 516 641 - -
Prci9g1868 643 SUPERFAMILY ArfGap/RecO-like zinc finger 534 627 IPR037278 -
Prci9g1868 643 Coils Coil 263 283 - -
Prci9g1868 643 SMART PH_update 328 465 IPR001849 -
Prci9g1868 643 SUPERFAMILY BAR/IMD domain-like 51 350 IPR027267 -
Prci9g1868 643 CDD ArfGap 537 620 - -
Prci9g1868 643 PRINTS HIV Rev interacting protein signature 565 582 IPR001164 GO:0005096
Prci9g1868 643 PRINTS HIV Rev interacting protein signature 588 609 IPR001164 GO:0005096
Prci9g1868 643 PRINTS HIV Rev interacting protein signature 546 565 IPR001164 GO:0005096
Prci9g1868 643 Pfam BAR domain of APPL family 51 268 IPR004148 GO:0005515|GO:0005737
Prci9g1868 643 CDD PH_ACAP 330 467 - -
Prci9g1868 643 ProSiteProfiles ARF GTPase-activating proteins domain profile. 534 617 IPR001164 GO:0005096
Prci9g1868 643 SMART arf_gap_3 534 642 IPR001164 GO:0005096
Prci9g1868 643 Pfam PH domain 329 459 IPR001849 -
Prci9g1868 643 PANTHER CENTAURIN/ARF 3 624 IPR045258 GO:0005096
Prci9g1868 643 SUPERFAMILY PH domain-like 239 462 - -
Prci9g1868 643 CDD BAR_SFC_plant 51 251 IPR035670 -
Prci9g1868 643 Pfam Putative GTPase activating protein for Arf 537 630 IPR001164 GO:0005096
Prci9g1868 643 Coils Coil 154 174 - -
Prci9g1868 643 SMART 5bar 35 254 IPR004148 GO:0005515|GO:0005737
Prci9g1868 643 Gene3D - 320 473 IPR011993 -
Prci9g1868 643 Gene3D Arf GTPase activating protein 520 641 IPR038508 -
Prci9g1868 643 ProSiteProfiles PH domain profile. 327 463 IPR001849 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g1868 Prci-Chr9 30184770 30193346 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g1868 533 634 C2H2 Transcription Factor Family AT4G21160 45.631 2.96e-20 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g1868 K12489 - qsa:O6P43_023509 891.338