LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci9g1858	ATGCCTTTTGAAATAATGAACCAGAGGGGCATATCTGCCTCGTCCCACCTTTTTGATGACAATTCCTTTTTTCCTGAGAAGAGTGTTGGATTGCAGAAGCCAAAATCCTTTCATGACCATTATTTACAAAGGAAAATAGGAGCATCGCCACAGAGCATTTCAAGTACATCGTCATCTCTAGAAATGAATGCCAACTCTGGCTTGCCAATTTCACAAACAAGTCTGTTGGGAGAAGTTACAGAAAAGCCGCAAGTTGGTGGAGGAGGCATTATTGACGTGTTGAACTCTACCAAGGATTCAATGACTCATCACCCCAGATCATGGTCTACTGTGCATATGCAGCCAGAACCTACATCTTATAGTTTAACTGGAAAAAAGATTCTCACTGATACTGCTTCCCATGAGAGCAGCCTATTCTCTAGCTCACTGTCTGAGGTCTTTGGCCAAAAATTGAGGTTATCTCGGAATGATATTCTGTCTCATCAGCCTGTTACCATTGGTTCCTTTCCTGAGGAAGAACCATACAAATCTCTTGAAGAAATTGAGGCTGACACTATTGGGAATCTCCTTCCTGATGAAGATGATCTGTTTTCTGGTGTTACTAATGAGTTAGGATACACTGCTAATGCCAGAACAACTGATGACTTTGAAGAGTTTGATTTGTTTAGCAGTGGTGGAGGCATGGAATTAGAGGGAGATGAACATCTAAGTTTGGGAAAGAAAATCAGCTGTCTGGATGTAGATTCCGGTTATTTTGGAGGTTTTAAAGGAAAACTTCCTTTTGGCGAACAACCTTCTAGGACACTTTTTGTTAGAAACATCAATAGCAATGTTGAAGATTCTGAGATAAAGGCTCTTTTTGAGAAATATGGAGACATCCGAACCATTTATACAGCCTGCAAGCATCGTGGGTTTGTGATGATTTCTTACTATGACCTAAGGGCAGCACAAAATGCAATGCAAGCACTTCAGAATAGGTCATTGAGGTCTCGGAAACTTGACATTCATTATTCAATTCCAAAGGGCAATGCTCCTGAGAAGGATATAAGCCATGGTACACTTGTGCTTTCTGGTCTTGATTCTTCTGTTTCGAATGATGAGCTTCAACAGATTTTTGGATTTTATGGAGAAATAAAGGAAATCTATGAATCTCCAGAAGTAAATTATAAAAAAAATATTGAATTTTATGATGTGCGAGCTGCAGAAGCTGCTCTTCGTGCATTAAACAGGAGTGACATTGCTGGTAAGCAGATCAAGCTTGAACCTGGTCATCCTCGGGGAACGACATGTCTGACGCTTGAGTCTCACAATGGCCAAGATGAACCTGATTTTGGTCAAAGTCTCTGTGACAACTCATCACTAAGACACAAGGCAACGATGTCTTCTGGAGTAATTGCACCTGGCTGCCTAGAAAATGGATCTAATCCTGGATTTCGCCCTGCAATACAGCAACCTATTAATGCATTAATTGATAATGCTTTCTCTCCTGTGAATTCTAGCATTCACAAATCAGTGAGAGGGCCAACTTCTGGAAAAGTGCCTGGTGTTTGCGATTCCAGTAACTTCCTTGATGCAATGAAGTTTTCCTCTGTTCCAAGATTCCATCCTCATTCCCTTCCTGATTATCATGATAGTTTTGCTAATGGTAGTGCTTACAACTTTTCAAGCATTGTTGGCAATGTGGCTGGCAATATTGGTAGTGGAGTGGCAGACAACTCAGATAGCAGGCCCAATCAGGGAATGGGATCAACTGGGAATATGATGGAATTTGCAGGAGCAGGAAATGGGAACCATCAACGTCATGGACTTTATCATGTGTGGAACAGCTCCAATTTGCACCAGGAGCCTTCACCAGGTCCCATGCTTTGGCAGAAAACACCATCATTTGTTAATGGTGCTTGTGCTCCTGGCCTTCCGCAAATGCCCAGCTTTCCTAGAACACAGCCTCACATGCTAAGAGCATCACACATAGACCACCATGTTGGGTCAGCTCCTGTTGTTACTGCCTCACCCTGGGACAGGCAACACTCTTATCTAGGAGTGTCTCCTGAAACTTCTGGTTTTCGTATGGGTTCTCTAGGAAGTGCTGGTTTACCTGGTAGTTGGCAATTGCATCCTCCGGAGTTTTCTTCTCACAACATGTTCCCTCATATTGGTGGGAATGGTGCAGAATTGACATCAACTGCTGGGCAAAACTCTCCTAATCAGTTGTCACATGCTTTTCCTGGGAGACATCCCATGGCTTCTATGTCCAAACTTGATTGCAATGAACGAATGAGGAATCTGTATCCCCTCCGGAAAAGTGAAGCTAACATTAATAATGCTGATAAAAAGCAATATGAACTTGACCTAGGCTGCATAATGCGTGGGGAAGACAGCCGTACAACTCTAATGATAAAAAATATTCCCAACAAGTATACTTCCAAGATGCTTCTAGCTGCTATAGATGAGCAATGTCGGGGAACTTATGATTTTCTATATTTGCCTATTGACTTTAAGAACAAATGTAATGTTGGCTATGCATTTATTAATATGATTGATCCTGCTCAGATTATTCCATTCCACCAGGCTTTTAATGGGAAAAAATGGGAGAAATTTAATAGTGAAAAGGTAGCCTCACTTGCATATGCCCGAATTCAGGGTAAAGCTGCACTTATCGCTCATTTCCAGAATTCAAGCCTGATGAATGAAGACAAGCGTTGCCGTCCTATTCTATTTCACACAGATGGCCCAAATGCTGGTGATCCGGAGCCTTTTCCCATGGGTACTAATGTTAGAATGAGGCCAGGAAAATCTCGCTGTAGTACTAATAATGAGGAGAATCGCAGCCAGGGGAGTCCTTCAACTTTGGCAAGCGTAGAGGGATCAACCACTAATGGAATAGATTCTTCATTGAGCTCTTCGCGGAACTCTGACTGA	2919	0.4224	MPFEIMNQRGISASSHLFDDNSFFPEKSVGLQKPKSFHDHYLQRKIGASPQSISSTSSSLEMNANSGLPISQTSLLGEVTEKPQVGGGGIIDVLNSTKDSMTHHPRSWSTVHMQPEPTSYSLTGKKILTDTASHESSLFSSSLSEVFGQKLRLSRNDILSHQPVTIGSFPEEEPYKSLEEIEADTIGNLLPDEDDLFSGVTNELGYTANARTTDDFEEFDLFSSGGGMELEGDEHLSLGKKISCLDVDSGYFGGFKGKLPFGEQPSRTLFVRNINSNVEDSEIKALFEKYGDIRTIYTACKHRGFVMISYYDLRAAQNAMQALQNRSLRSRKLDIHYSIPKGNAPEKDISHGTLVLSGLDSSVSNDELQQIFGFYGEIKEIYESPEVNYKKNIEFYDVRAAEAALRALNRSDIAGKQIKLEPGHPRGTTCLTLESHNGQDEPDFGQSLCDNSSLRHKATMSSGVIAPGCLENGSNPGFRPAIQQPINALIDNAFSPVNSSIHKSVRGPTSGKVPGVCDSSNFLDAMKFSSVPRFHPHSLPDYHDSFANGSAYNFSSIVGNVAGNIGSGVADNSDSRPNQGMGSTGNMMEFAGAGNGNHQRHGLYHVWNSSNLHQEPSPGPMLWQKTPSFVNGACAPGLPQMPSFPRTQPHMLRASHIDHHVGSAPVVTASPWDRQHSYLGVSPETSGFRMGSLGSAGLPGSWQLHPPEFSSHNMFPHIGGNGAELTSTAGQNSPNQLSHAFPGRHPMASMSKLDCNERMRNLYPLRKSEANINNADKKQYELDLGCIMRGEDSRTTLMIKNIPNKYTSKMLLAAIDEQCRGTYDFLYLPIDFKNKCNVGYAFINMIDPAQIIPFHQAFNGKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPMGTNVRMRPGKSRCSTNNEENRSQGSPSTLASVEGSTTNGIDSSLSSSRNSD	972

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci9g1858	972	MobiDBLite	consensus disorder prediction	929	972	-	-
	Prci9g1858	972	FunFam	Protein MEI2-like 1	351	445	-	-
	Prci9g1858	972	SMART	rrm1_1	268	336	IPR000504	GO:0003723
	Prci9g1858	972	SMART	rrm1_1	353	421	IPR000504	GO:0003723
	Prci9g1858	972	SMART	rrm1_1	796	872	IPR000504	GO:0003723
	Prci9g1858	972	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	269	333	IPR000504	GO:0003723
	Prci9g1858	972	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	354	419	IPR000504	GO:0003723
	Prci9g1858	972	CDD	RRM1_MEI2_like	266	341	IPR034453	-
	Prci9g1858	972	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	352	425	IPR000504	GO:0003723
	Prci9g1858	972	SUPERFAMILY	RNA-binding domain, RBD	264	426	IPR035979	GO:0003676
	Prci9g1858	972	MobiDBLite	consensus disorder prediction	906	972	-	-
	Prci9g1858	972	CDD	RRM3_MEI2_like	797	882	IPR034454	-
	Prci9g1858	972	FunFam	MEI2-like protein 5 isoform 2	256	350	-	-
	Prci9g1858	972	Pfam	RNA recognition motif 2	794	890	IPR007201	-
	Prci9g1858	972	SUPERFAMILY	RNA-binding domain, RBD	796	881	IPR035979	GO:0003676
	Prci9g1858	972	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	267	340	IPR000504	GO:0003723
	Prci9g1858	972	PANTHER	RNA RECOGNITION MOTIF-CONTAINING	82	946	-	-
	Prci9g1858	972	Gene3D	-	345	429	IPR012677	-
	Prci9g1858	972	Gene3D	-	261	344	IPR012677	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci9g1858	Prci-Chr9	30143195	30151490	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci9g1858	262	378	Eukaryotic Initiation Factors Gene Family	AT3G16380	25.373	6.68e-07	51.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci9g1858	-		-	gmx:100797893	1352.04