LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci9g1856	ATGCCTTTTGAAATAATGAACCAGAGGGGCATATCTGCCTCGTCCCACCTTTTTGATGACAATTCCTTTTTTCCTGAGAGTGTTGGATTGCAGAAGCCAAAATCCTTTCATGACCATTATTTACAAAGGAAAATAGGAGCATCGCCACAGAGCATTTCAAGTACATCGTCATCTCTAGAAATGAATGCCAACTCTGGCTTGCCAATTTCACAAACAAGTCTGTTGGGAGAAGTTACAGAAAAGCCGCAAGTTGGTGGAGGAGGCATTATTGACGTGTTGAACTCTACCAAGGATTCAATGACTCATCACCCCAGATCATGGTCTACTGTGCATATGCAGCCAGAACCTACATCTTATAGTTTAACTGGAAAAAAGATTCTCACTGATACTGCTTCCCATGAGAGCAGCCTATTCTCTAGCTCACTGTCTGAGGTCTTTGGCCAAAAATTGAGGTTATCTCGGAATGATATTCTGTCTCATCAGCCTGTTACCATTGGTTCCTTTCCTGAGGAAGAACCATACAAATCTCTTGAAGAAATTGAGGCTGACACTATTGGGAATCTCCTTCCTGATGAAGATGATCTGTTTTCTGGTGTTACTAATGAGTTAGGATACACTGCTAATGCCAGAACAACTGATGACTTTGAAGAGTTTGATTTGTTTAGCAGTGGTGGAGGCATGGAATTAGAGGGAGATGAACATCTAAGTTTGGGAAAGAAAATCAGCTGTCTGGATGTAGATTCCGGTTATTTTGGAGGTTTTAAAGGAAAACTTCCTTTTGGCGAACAACCTTCTAGGACACTTTTTGTTAGAAACATCAATAGCAATGTTGAAGATTCTGAGATAAAGGCTCTTTTTGAGAAATATGGAGACATCCGAACCATTTATACAGCCTGCAAGCATCGTGGGTTTGTGATGATTTCTTACTATGACCTAAGGGCAGCACAAAATGCAATGCAAGCACTTCAGAATAGGTCATTGAGGTCTCGGAAACTTGACATTCATTATTCAATTCCAAAGGGCAATGCTCCTGAGAAGGATATAAGCCATGGTACACTTGTGCTTTCTGGTCTTGATTCTTCTGTTTCGAATGATGAGCTTCAACAGATTTTTGGATTTTATGGAGAAATAAAGGAAATCTATGAATCTCCAGAAGTAAATTATAAAAAAAATATTGAATTTTATGATGTGCGAGCTGCAGAAGCTGCTCTTCGTGCATTAAACAGGAGTGACATTGCTGGTAAGCAGATCAAGCTTGAACCTGGTCATCCTCGGGGAACGACATGTCTGACGCTTGAGTCTCACAATGGCCAAGATGAACCTGATTTTGGTCAAAGTCTCTGTGACAACTCATCACTAAGACACAAGGCAACGATGTCTTCTGGAGTAATTGCACCTGGCTGCCTAGAAAATGGATCTAATCCTGGATTTCGCCCTGCAATACAGCAACCTATTAATGCATTAATTGATAATGCTTTCTCTCCTGTGAATTCTAGCATTCACAAATCAGTGAGAGGGCCAACTTCTGGAAAAGTGCCTGGTGTTTGCGATTCCAGTAACTTCCTTGATGCAATGAAGTTTTCCTCTGTTCCAAGATTCCATCCTCATTCCCTTCCTGATTATCATGATAGTTTTGCTAATGGTAGTGCTTACAACTTTTCAAGCATTGTTGGCAATGTGGCTGGCAATATTGGTAGTGGAGTGGCAGACAACTCAGATAGCAGGCCCAATCAGGGAATGGGATCAACTGGGAATATGATGGAATTTGCAGGAGCAGGAAATGGGAACCATCAACGTCATGGACTTTATCATGTGTGGAACAGCTCCAATTTGCACCAGGAGCCTTCACCAGGTCCCATGCTTTGGCAGAAAACACCATCATTTGTTAATGGTGCTTGTGCTCCTGGCCTTCCGCAAATGCCCAGCTTTCCTAGAACACAGCCTCACATGCTAAGAGCATCACACATAGACCACCATGTTGGGTCAGCTCCTGTTGTTACTGCCTCACCCTGGGACAGGCAACACTCTTATCTAGGAGTGTCTCCTGAAACTTCTGGTTTTCGTATGGGTTCTCTAGGAAGTGCTGGTTTACCTGGTAGTTGGCAATTGCATCCTCCGGAGTTTTCTTCTCACAACATGTTCCCTCATATTGGTGGGAATGGTGCAGAATTGACATCAACTGCTGGGCAAAACTCTCCTAATCAGTTGTCACATGCTTTTCCTGGGAGACATCCCATGGCTTCTATGTCCAAACTTGATTGCAATGAACGAATGAGGAATCTGTATCCCCTCCGGAAAAGTGAAGCTAACATTAATAATGCTGATAAAAAGCAATATGAACTTGACCTAGGCTGCATAATGCGTGGGGAAGACAGCCGTACAACTCTAATGATAAAAAATATTCCCAACAAGTATACTTCCAAGATGCTTCTAGCTGCTATAGATGAGCAATGTCGGGGAACTTATGATTTTCTATATTTGCCTATTGACTTTAAGAACAAATGTAATGTTGGCTATGCATTTATTAATATGATTGATCCTGCTCAGATTATTCCATTCCACCAGGCTTTTAATGGGAAAAAATGGGAGAAATTTAATAGTGAAAAGGTAGCCTCACTTGCATATGCCCGAATTCAGGGTAAAGCTGCACTTATCGCTCATTTCCAGAATTCAAGCCTGATGAATGAAGACAAGCGTTGCCGTCCTATTCTATTTCACACAGATGGCCCAAATGCTGGTGATCCGGAGCCTTTTCCCATGGGTACTAATGTTAGAATGAGGCCAGGAAAATCTCGCTGTAGTACTAATAATGAGGAGAATCGCAGCCAGGGGAGTCCTTCAACTTTGGCAAGCGTAGAGGGATCAACCACTAATGGAATAGATTCTTCATTGAGCTCTTCGCGGAACTCTGACTGA	2916	0.4225	MPFEIMNQRGISASSHLFDDNSFFPESVGLQKPKSFHDHYLQRKIGASPQSISSTSSSLEMNANSGLPISQTSLLGEVTEKPQVGGGGIIDVLNSTKDSMTHHPRSWSTVHMQPEPTSYSLTGKKILTDTASHESSLFSSSLSEVFGQKLRLSRNDILSHQPVTIGSFPEEEPYKSLEEIEADTIGNLLPDEDDLFSGVTNELGYTANARTTDDFEEFDLFSSGGGMELEGDEHLSLGKKISCLDVDSGYFGGFKGKLPFGEQPSRTLFVRNINSNVEDSEIKALFEKYGDIRTIYTACKHRGFVMISYYDLRAAQNAMQALQNRSLRSRKLDIHYSIPKGNAPEKDISHGTLVLSGLDSSVSNDELQQIFGFYGEIKEIYESPEVNYKKNIEFYDVRAAEAALRALNRSDIAGKQIKLEPGHPRGTTCLTLESHNGQDEPDFGQSLCDNSSLRHKATMSSGVIAPGCLENGSNPGFRPAIQQPINALIDNAFSPVNSSIHKSVRGPTSGKVPGVCDSSNFLDAMKFSSVPRFHPHSLPDYHDSFANGSAYNFSSIVGNVAGNIGSGVADNSDSRPNQGMGSTGNMMEFAGAGNGNHQRHGLYHVWNSSNLHQEPSPGPMLWQKTPSFVNGACAPGLPQMPSFPRTQPHMLRASHIDHHVGSAPVVTASPWDRQHSYLGVSPETSGFRMGSLGSAGLPGSWQLHPPEFSSHNMFPHIGGNGAELTSTAGQNSPNQLSHAFPGRHPMASMSKLDCNERMRNLYPLRKSEANINNADKKQYELDLGCIMRGEDSRTTLMIKNIPNKYTSKMLLAAIDEQCRGTYDFLYLPIDFKNKCNVGYAFINMIDPAQIIPFHQAFNGKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPMGTNVRMRPGKSRCSTNNEENRSQGSPSTLASVEGSTTNGIDSSLSSSRNSD	971

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci9g1856	971	CDD	RRM1_MEI2_like	265	340	IPR034453	-
	Prci9g1856	971	FunFam	MEI2-like protein 5 isoform 2	255	349	-	-
	Prci9g1856	971	Pfam	RNA recognition motif 2	793	889	IPR007201	-
	Prci9g1856	971	CDD	RRM3_MEI2_like	796	881	IPR034454	-
	Prci9g1856	971	Gene3D	-	260	343	IPR012677	-
	Prci9g1856	971	SUPERFAMILY	RNA-binding domain, RBD	263	425	IPR035979	GO:0003676
	Prci9g1856	971	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	353	418	IPR000504	GO:0003723
	Prci9g1856	971	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	268	332	IPR000504	GO:0003723
	Prci9g1856	971	MobiDBLite	consensus disorder prediction	928	971	-	-
	Prci9g1856	971	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	351	424	IPR000504	GO:0003723
	Prci9g1856	971	Gene3D	-	344	428	IPR012677	-
	Prci9g1856	971	MobiDBLite	consensus disorder prediction	905	971	-	-
	Prci9g1856	971	SUPERFAMILY	RNA-binding domain, RBD	795	880	IPR035979	GO:0003676
	Prci9g1856	971	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	266	339	IPR000504	GO:0003723
	Prci9g1856	971	SMART	rrm1_1	352	420	IPR000504	GO:0003723
	Prci9g1856	971	SMART	rrm1_1	267	335	IPR000504	GO:0003723
	Prci9g1856	971	SMART	rrm1_1	795	871	IPR000504	GO:0003723
	Prci9g1856	971	FunFam	Protein MEI2-like 1	350	444	-	-
	Prci9g1856	971	PANTHER	RNA RECOGNITION MOTIF-CONTAINING	81	945	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci9g1856	Prci-Chr9	30143195	30151491	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci9g1856	261	377	Eukaryotic Initiation Factors Gene Family	AT3G16380	25.373	6.73e-07	51.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci9g1856	-		-	gmx:100797893	1346.64