Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g1768 ATGTGGAGGGAGAATGGATCCTCTGAATCCGATTCAACAGCTGTTTCGAACTCCGTCAAAGATCCAGAACTGGGAAATCAGTCAGCTTCTTCCTCTCTAGTTCCCATCACGATCCTGAAACGTCAGATCTCAATCCCAGGGATGAGACTGATGCCCTTCAGGAAGACCTTCAGGATAACTGGTACTGGAGAATCTGAGAAGGAACAAGTTTTCAATGAACATAACCAGAATTGGAATGGAAATGAGGACGATGGTTGGGGGGAGAATGTGAACGAGAGTGGAGAAGAACGATGGGAAAGCAGCAGTAGAGCACACCAGTACCCGGTGAGGACCGAAGCTGAAGATTGTGCGTTCTATCTCAAGACTGGAACTTGCAAATTTGGGTTTAACTGCAAGTTTAATCACCCTCTTAGGAAGAAAATCAAGGTTGTTAAGGAGAAGGGAAAAGAAAGAGAAGAATCAGGAGAAAGATCAGGGCAGACTGAATGCAAGTATTATCTAAAGTCAGGAGGTTGTAAATACGGAAAGGCTTGTAAATTTAACCACACCAGAGGAAAATGTTCTCCAACCACTATTTTAGAACTTAACTTTCTCGGCCTGCCTATTCGTCTGGGGGAGAAAGAGTGCCCCTATTATATGCGTACTGGCTCTTGTAAGTTTGGAGCAAACTGCAAATTCAATCACCCTGATCCTACTACTGTTGGAGGAAGTGATCCTCCTTCAACATTTGCTAATGGTGGGGCTGTTTCTTTACAAGGTGTATCTCAGCCATCTATACCCTCTTGGTCTTCTCCAAGAACATTCAATGAAACTGCCCCGTTTGTGCCAATGATGATTCCTCCTGTTCAAGGGGTTTCTCCCCAAAGTTCTGATTGGAATGGATATCAGGCACCTGTCTACCTACCTGAGAGGACTATGCACCCACCATCTACATACATTGTGAACAGCCCAGCTATTGAAACAAATGTCTTTATGCATCATCCGAAGCAGACGCAGGTTGAAGAGTTTCCAGAAAGGCCTGGTGAACCAGAGTGCAGTTACTACTTAAAAACTGGCCATTGCAAATTTAAATCTAATTGTAAATTTCACCATCCAAAGAACCGCAGTACAAGACCTCTATGCACTCTAAGTGACAAGGGTCTGCCTTTGAGACCTGACCAGAGTGTCTGCTCGCACTATAGTCGCTATGGAATATGCAAATATGGGCCGTCTTGTAAGTTTGACCACCCAACAAACCTATCGCCGTCAAACATGGCTGGACTGGATCAGGAATCCTCCTGCACAGACTTTGCTAGTCTGGAAGTAGCTGAGATGGCTGGAAGTAGAGGTGCAGGTGACTCCGCAGTTAAGCAACCTGTGTAA 1362 0.4508 MWRENGSSESDSTAVSNSVKDPELGNQSASSSLVPITILKRQISIPGMRLMPFRKTFRITGTGESEKEQVFNEHNQNWNGNEDDGWGENVNESGEERWESSSRAHQYPVRTEAEDCAFYLKTGTCKFGFNCKFNHPLRKKIKVVKEKGKEREESGERSGQTECKYYLKSGGCKYGKACKFNHTRGKCSPTTILELNFLGLPIRLGEKECPYYMRTGSCKFGANCKFNHPDPTTVGGSDPPSTFANGGAVSLQGVSQPSIPSWSSPRTFNETAPFVPMMIPPVQGVSPQSSDWNGYQAPVYLPERTMHPPSTYIVNSPAIETNVFMHHPKQTQVEEFPERPGEPECSYYLKTGHCKFKSNCKFHHPKNRSTRPLCTLSDKGLPLRPDQSVCSHYSRYGICKYGPSCKFDHPTNLSPSNMAGLDQESSCTDFASLEVAEMAGSRGAGDSAVKQPV 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g1768 453 SMART c3hfinal6 110 137 IPR000571 GO:0046872
Prci9g1768 453 SMART c3hfinal6 384 411 IPR000571 GO:0046872
Prci9g1768 453 SMART c3hfinal6 157 184 IPR000571 GO:0046872
Prci9g1768 453 SMART c3hfinal6 203 230 IPR000571 GO:0046872
Prci9g1768 453 SMART c3hfinal6 339 366 IPR000571 GO:0046872
Prci9g1768 453 SUPERFAMILY CCCH zinc finger 382 410 IPR036855 GO:0046872
Prci9g1768 453 ProSiteProfiles Zinc finger C3H1-type profile. 384 412 IPR000571 GO:0046872
Prci9g1768 453 Gene3D - 73 145 - -
Prci9g1768 453 SUPERFAMILY CCCH zinc finger 344 367 IPR036855 GO:0046872
Prci9g1768 453 SUPERFAMILY CCCH zinc finger 161 186 IPR036855 GO:0046872
Prci9g1768 453 ProSiteProfiles Zinc finger C3H1-type profile. 203 231 IPR000571 GO:0046872
Prci9g1768 453 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 386 410 IPR000571 GO:0046872
Prci9g1768 453 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 341 366 IPR000571 GO:0046872
Prci9g1768 453 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 160 182 IPR000571 GO:0046872
Prci9g1768 453 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 114 136 IPR000571 GO:0046872
Prci9g1768 453 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 206 229 IPR000571 GO:0046872
Prci9g1768 453 MobiDBLite consensus disorder prediction 75 101 - -
Prci9g1768 453 Gene3D - 384 436 - -
Prci9g1768 453 Gene3D - 323 378 - -
Prci9g1768 453 ProSiteProfiles Zinc finger C3H1-type profile. 339 367 IPR000571 GO:0046872
Prci9g1768 453 ProSiteProfiles Zinc finger C3H1-type profile. 157 185 IPR000571 GO:0046872
Prci9g1768 453 Gene3D - 146 234 - -
Prci9g1768 453 SUPERFAMILY CCCH zinc finger 108 138 IPR036855 GO:0046872
Prci9g1768 453 SUPERFAMILY CCCH zinc finger 204 230 IPR036855 GO:0046872
Prci9g1768 453 MobiDBLite consensus disorder prediction 1 28 - -
Prci9g1768 453 PANTHER PROTEIN PHOSPHATASE RELATED 64 416 - -
Prci9g1768 453 ProSiteProfiles Zinc finger C3H1-type profile. 110 138 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g1768 Prci-Chr9 29641373 29645528 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g1768 90 413 C2H2 Transcription Factor Family AT3G02830 39.118 1.40e-74 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Prci9g1768 zf-CCCH 3.2e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g1768 - - gmx:100786894 553.903