LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci9g1764	ATGATAACGTCTTCCCTCTCTCTGCTCTTCTTGCTCTCCTTTCTTCTCTCCATAACCCTCATTTCCTCCAGACCCCTCCAAGACCCAGAGTTGGTAGTACAAGAAGTGAACAGGAAGATCAATGCTTCCACGGCTCGGAGGAACTTGGGGTACCTCTCGTGTGGTACAGGTAACCCCATTGACGATTGCTGGAGATGTGACCCCGACTGGGAGAATAACAGGCAGAGGCTGGCCGATTGTGCTATTGGGTTCGGGAAGAATGCTGTCGGGGGTAAGGGTGGTCAGATTTACGTGGTAACGGACTCCGGCGACGACGACCCCGTCAACCCGAAGCCGGGGACACTCCGGTACGGCGCGATCCAAGACGAGCCGTTGTGGATCACATTCGCGAGGGACATGGTGATACAGCTGAAAGAAGAGCTTATAATGAACTCGTTCAAGACCATCGACGGTAGAGGCGCGATCGTGCATATTGCGGGCGGTCCGTGCATTACAATCCAGTACGTGACCAACATTATAATCCACGGGATTCACATCCATGACTGCAAGCAGGGCGGGAACGCCATGGTGAGGGACTCCCCAAAGCACTACGGGTGGAGAACAGTATCGGACGGTGACGGGGTGTCCATCTTCGGAGGGAGCCACGTGTGGGTGGACCATTGCTCCCTGTCGAATTGCAACGACGGGTTGATCGATGCGATTCATGGGTCCACCGCGATCACCATCTCCAACAATTACATGACTCACCATGACAAGGTCATGTTATTGGGTCACAGTGACTCCTACACGGAAGACAAGAACATGCAGGTCACCATAGCCTTTAATCACTTCGGAGAAGGGCTCGTTCAAAGAATGCCAAGATGCAGGCATGGATATTTCCATGTGGTGAACAATGACTACACCCATTGGGAAATGTACGCCATTGGTGGAAGTGCTAACCCAACCATCAACAGCCAGGGCAACAGATTTGCAGCACCCGATGATAGATTCAGCAAAGAGGTGACGAAGCACGAGGATGCGGAAGAGAGCGAGTGGAAGAACTGGAACTGGAGGTCGGAAGGGGACTTGATGGTAAACGGTGCGTTTTTCACGGCGTCGGGAGCTGGAGCGTCGTCAAGCTATGCGAGGGCGTCGAGTTTGAGTGCGAGGCCCTCTTCGCTGGTGGGTTCGATAACCGGAGGTGCCGGTACCCTTGACTGTAGAAAAGGCTCTCGTTGCTGA	1221	0.5373	MITSSLSLLFLLSFLLSITLISSRPLQDPELVVQEVNRKINASTARRNLGYLSCGTGNPIDDCWRCDPDWENNRQRLADCAIGFGKNAVGGKGGQIYVVTDSGDDDPVNPKPGTLRYGAIQDEPLWITFARDMVIQLKEELIMNSFKTIDGRGAIVHIAGGPCITIQYVTNIIIHGIHIHDCKQGGNAMVRDSPKHYGWRTVSDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTEDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFAAPDDRFSKEVTKHEDAEESEWKNWNWRSEGDLMVNGAFFTASGAGASSSYARASSLSARPSSLVGSITGGAGTLDCRKGSRC	406

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Prci9g1764	406	Pfam	Pectate lyase	165	323	IPR002022	-
Prci9g1764	406	FunFam	Pectate lyase	57	399	-	-
Prci9g1764	406	SMART	amb_all	132	329	IPR002022	-
Prci9g1764	406	SUPERFAMILY	Pectin lyase-like	34	400	IPR011050	-
Prci9g1764	406	Gene3D	-	57	399	IPR012334	-
Prci9g1764	406	PRINTS	Pollen allergen Amb family signature	306	325	IPR018082	-
Prci9g1764	406	PRINTS	Pollen allergen Amb family signature	140	156	IPR018082	-
Prci9g1764	406	PRINTS	Pollen allergen Amb family signature	204	225	IPR018082	-
Prci9g1764	406	PRINTS	Pollen allergen Amb family signature	104	129	IPR018082	-
Prci9g1764	406	PRINTS	Pollen allergen Amb family signature	284	303	IPR018082	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci9g1764	Prci-Chr9	29612721	29614643	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci9g1764	5	406	Polysaccharide Lyase	AT5G63180	80.693	0.0	674

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci9g1764	K01728		-	gmx:100101868	716.842

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Prci9g1764	9	29612721	29614643	Prci9g1764	9	29612721	29614643	ECH
	Prci4g2141	4	33713869	33716382	Prci9g1764	9	29612721	29614643	ECH

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