Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g1764 ATGATAACGTCTTCCCTCTCTCTGCTCTTCTTGCTCTCCTTTCTTCTCTCCATAACCCTCATTTCCTCCAGACCCCTCCAAGACCCAGAGTTGGTAGTACAAGAAGTGAACAGGAAGATCAATGCTTCCACGGCTCGGAGGAACTTGGGGTACCTCTCGTGTGGTACAGGTAACCCCATTGACGATTGCTGGAGATGTGACCCCGACTGGGAGAATAACAGGCAGAGGCTGGCCGATTGTGCTATTGGGTTCGGGAAGAATGCTGTCGGGGGTAAGGGTGGTCAGATTTACGTGGTAACGGACTCCGGCGACGACGACCCCGTCAACCCGAAGCCGGGGACACTCCGGTACGGCGCGATCCAAGACGAGCCGTTGTGGATCACATTCGCGAGGGACATGGTGATACAGCTGAAAGAAGAGCTTATAATGAACTCGTTCAAGACCATCGACGGTAGAGGCGCGATCGTGCATATTGCGGGCGGTCCGTGCATTACAATCCAGTACGTGACCAACATTATAATCCACGGGATTCACATCCATGACTGCAAGCAGGGCGGGAACGCCATGGTGAGGGACTCCCCAAAGCACTACGGGTGGAGAACAGTATCGGACGGTGACGGGGTGTCCATCTTCGGAGGGAGCCACGTGTGGGTGGACCATTGCTCCCTGTCGAATTGCAACGACGGGTTGATCGATGCGATTCATGGGTCCACCGCGATCACCATCTCCAACAATTACATGACTCACCATGACAAGGTCATGTTATTGGGTCACAGTGACTCCTACACGGAAGACAAGAACATGCAGGTCACCATAGCCTTTAATCACTTCGGAGAAGGGCTCGTTCAAAGAATGCCAAGATGCAGGCATGGATATTTCCATGTGGTGAACAATGACTACACCCATTGGGAAATGTACGCCATTGGTGGAAGTGCTAACCCAACCATCAACAGCCAGGGCAACAGATTTGCAGCACCCGATGATAGATTCAGCAAAGAGGTGACGAAGCACGAGGATGCGGAAGAGAGCGAGTGGAAGAACTGGAACTGGAGGTCGGAAGGGGACTTGATGGTAAACGGTGCGTTTTTCACGGCGTCGGGAGCTGGAGCGTCGTCAAGCTATGCGAGGGCGTCGAGTTTGAGTGCGAGGCCCTCTTCGCTGGTGGGTTCGATAACCGGAGGTGCCGGTACCCTTGACTGTAGAAAAGGCTCTCGTTGCTGA 1221 0.5373 MITSSLSLLFLLSFLLSITLISSRPLQDPELVVQEVNRKINASTARRNLGYLSCGTGNPIDDCWRCDPDWENNRQRLADCAIGFGKNAVGGKGGQIYVVTDSGDDDPVNPKPGTLRYGAIQDEPLWITFARDMVIQLKEELIMNSFKTIDGRGAIVHIAGGPCITIQYVTNIIIHGIHIHDCKQGGNAMVRDSPKHYGWRTVSDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTEDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFAAPDDRFSKEVTKHEDAEESEWKNWNWRSEGDLMVNGAFFTASGAGASSSYARASSLSARPSSLVGSITGGAGTLDCRKGSRC 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g1764 406 Pfam Pectate lyase 165 323 IPR002022 -
Prci9g1764 406 FunFam Pectate lyase 57 399 - -
Prci9g1764 406 SMART amb_all 132 329 IPR002022 -
Prci9g1764 406 SUPERFAMILY Pectin lyase-like 34 400 IPR011050 -
Prci9g1764 406 Gene3D - 57 399 IPR012334 -
Prci9g1764 406 PRINTS Pollen allergen Amb family signature 306 325 IPR018082 -
Prci9g1764 406 PRINTS Pollen allergen Amb family signature 140 156 IPR018082 -
Prci9g1764 406 PRINTS Pollen allergen Amb family signature 204 225 IPR018082 -
Prci9g1764 406 PRINTS Pollen allergen Amb family signature 104 129 IPR018082 -
Prci9g1764 406 PRINTS Pollen allergen Amb family signature 284 303 IPR018082 -
Prci9g1764 406 PRINTS Pollen allergen Amb family signature 80 97 IPR018082 -
Prci9g1764 406 PRINTS Pollen allergen Amb family signature 348 372 IPR018082 -
Prci9g1764 406 PRINTS Pollen allergen Amb family signature 377 400 IPR018082 -
Prci9g1764 406 PANTHER PECTATE LYASE 18-RELATED 26 404 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g1764 Prci-Chr9 29612721 29614643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g1764 5 406 Polysaccharide Lyase AT5G63180 80.693 0.0 674
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g1764 K01728 - gmx:100101868 716.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci9g1764 9 29612721 29614643 Prci9g1764 9 29612721 29614643 ECH
Prci4g2141 4 33713869 33716382 Prci9g1764 9 29612721 29614643 ECH