Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g1742 ATGAGTTCTTCCATGGAGGTTACATTGCAAAATCCCCCGGTTGACGAAATATCCGAACAAAATGATGTCGCTGCCCAAGACCTAGCTTCTTCTACCATGCTTCCCGAAGAGAGAGTTCTCGTCTCTGTTGAAGTATGTCTTAAACCTTCAAGTACAGCTCGGATCGTTGATGTTCGTTCAGCCGTCGAGAGGATGCTCGAGAACAGGTGTTTGAGCTATATTGATGGACCCATTCCCCTGCCTCTTGATGATACGTTTCTTTCAGAAAACGTGCAAAGAATCAGTATTTGTGATACTGATGAGTCGACGAGCAACCATAACATTCTTTTGTTCTGGCAAGTCAAGCCTGATGTGCATGTCTTTCAGCTTAGTGAAGAAGGACCATGCGAGGAAATAAGTACTGATGGCCAACCTTCCAGCTTCAATGAATGGATTCTTCCAGCAAAAGAATTCGATGGCATGTGGGAAAGCTTAATATATGAATCTGGTCTCAAGCAAAGATTGTTAAGATATGCAGCAAGCGCTTTACTTTTTACTGAAAAGGGCGTTGATCCATTTCTGGTTTCATGGAATCGCATTGTTCTCTTACACGGACCTCCTGGGACTGGAAAGACATCTTTATGTAAAGCATTAGCACAAAAACTATCCATCCGATTCAATCAAAGATACTCCCAGTGTCAGCTGATTGAAGTTAATGCACACTCTTTGTTCAGTAAATGGTTCTCTGAAAGTGGCAAGCTGGTTGCAAAGCTTTTCCAAAAGATTCAAGAAATGGTAGAGGAAGAAAACAATCTGGTATTTGTTTTGATTGATGAAGTCGAAAGCCTTGCTGCCGCCAGAAAAGCTGCTTTGTCTGGTTCTGAACCTTCAGACTCTATTCGGGTCGTCAATGCGTTGTTAACTCAGATGGACAAGTTAAAATCTTCTCCAAATGTGATAATTCTAACTACATCCAACATAACTGCTGCTATCGATATTGCTTTTGTCGATCGAGCTGATATCAAAGCATATGTTGGTCCTCCAACTCTCCAAGCTCGCTATGAAATACTGAGGTCGTGCTTGGAGGAGTTGATGCGCACAGGGATCTTGACAAGTTTTCAGGATTGTATGAACATCAAGCTTCCGAATTATGTTAATGCTAAGCAAAAGTTGAACGCACATGAGAACCATGACGCCGCTCGTTTGTGTAAACAATTACTTGAAACTGCAGAGGCATGTGAGGGAATGAGCGGGAGGTCTTTGAGAAAGCTTCCATTCTTGGCGCATGCTGCCCTTGCCAATCCTTCAGATTGCAACCCATTTAAGTTCTTATGCACAATGATAGGAACAGCGAAGAGGGACCGTTCTGAGCTTCCCAAGTGA 1362 0.4295 MSSSMEVTLQNPPVDEISEQNDVAAQDLASSTMLPEERVLVSVEVCLKPSSTARIVDVRSAVERMLENRCLSYIDGPIPLPLDDTFLSENVQRISICDTDESTSNHNILLFWQVKPDVHVFQLSEEGPCEEISTDGQPSSFNEWILPAKEFDGMWESLIYESGLKQRLLRYAASALLFTEKGVDPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFNQRYSQCQLIEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLEELMRTGILTSFQDCMNIKLPNYVNAKQKLNAHENHDAARLCKQLLETAEACEGMSGRSLRKLPFLAHAALANPSDCNPFKFLCTMIGTAKRDRSELPK 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g1742 453 PANTHER PACHYTENE CHECKPOINT PROTEIN 2 30 450 IPR044539 -
Prci9g1742 453 CDD RecA-like_Pch2-like 140 338 - -
Prci9g1742 453 Pfam ATPase family associated with various cellular activities (AAA) 194 339 IPR003959 GO:0005524|GO:0016887
Prci9g1742 453 Gene3D - 137 359 IPR027417 -
Prci9g1742 453 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 308 322 IPR001270 GO:0005524
Prci9g1742 453 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 194 212 IPR001270 GO:0005524
Prci9g1742 453 SMART AAA_5 190 342 IPR003593 GO:0016887
Prci9g1742 453 FunFam pachytene checkpoint protein 2 homolog 134 356 - -
Prci9g1742 453 ProSitePatterns AAA-protein family signature. 312 331 IPR003960 GO:0005524|GO:0016887
Prci9g1742 453 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 421 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g1742 Prci-Chr9 29456562 29463106 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g1742 130 357 Calmodulin-binding Proteins AT3G56690 30.472 1.40e-17 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g1742 K22399 - qsa:O6P43_022652 724.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci9g1742 9 29456562 29463106 Prci9g1742 9 29456562 29463106 ECH