Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g1733 ATGGGTCGCCATTCCTGTTGTGTCAAGCAAAAGTTGAGGAAAGGCTTATGGTCCCCTGAAGAAGACGAGAAGCTTTTCAACCACATAACTAGATTTGGCGTTGGCTGCTGGAGCTCCGTTCCAAAACTAGCTGGACTTCAAAGATGTGGAAAGAGCTGTAGATTGAGGTGGATAAACTATCTGAGGCCTGATTTGAAAAGAGGCATGTTCTCCCAGCAAGAGGAAGATGTTATTCTGAGTCTCCATGAAGTTCTGGGCAATAGGTGGGCACAGATCGCAGCACAGTTACCAGGAAGAACAGATAACGAAATCAAGAACTTCTGGAACTCATGCTTGAAGAAGAAGCTGCTGAAGCAAGGGATTGACCCAGCCACCCACAAGCCCTTCGCTCAACCTCAAATAAAGCAGGAGAACAATAGCATAGAGACACCACCACCACCACCACTATCCCTGCAAAATATACATCATCTCACAAACTTGGCCTCCTCACAGTCACAAGGGTCACCTTTTCTGACAACCGATTCAAGTTATTACGATATATCTGTTCTAACAGAAGCCTCGAGAGATGAAATCCTCATGAGCATGAGCAACAAGCCTCATGAATGGGTCGTCGACCCTCTGTCGTACTACGATTCATACTCGAGCCAGTATCAGTATGGAACCAGTTCAAGCTACGGGATCTGCTCAATGCCTAGTTTGACGAGTTCGGATCAGAACAACTTGTCAACGATCACGGAGTTCTCAGACAACAACAATTCGGGTTCAAAAATTTGCTCAAGCAATAACAGCTCGAACATGAGCAGTTATATGATGGAGAATAACAGAGGGATCGTATTGTGGGAGGGAGAGCACAAGATGGAAGCGTCGTTTCAGTTTCAAGCAAACGGGATGAAATCGGAGGGACTGATGAACACATGCTCGTGGGGAGGAGCAGTGCAGCTTCAGAACCACAGTTCGATGGATTTCAACACCTATCCGTTAACGTCATTCTCACAAGATCTAACGGCAGCGACTTATGATGTATTCCGGCACATATGA 1038 0.4615 MGRHSCCVKQKLRKGLWSPEEDEKLFNHITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDVILSLHEVLGNRWAQIAAQLPGRTDNEIKNFWNSCLKKKLLKQGIDPATHKPFAQPQIKQENNSIETPPPPPLSLQNIHHLTNLASSQSQGSPFLTTDSSYYDISVLTEASRDEILMSMSNKPHEWVVDPLSYYDSYSSQYQYGTSSSYGICSMPSLTSSDQNNLSTITEFSDNNNSGSKICSSNNSSNMSSYMMENNRGIVLWEGEHKMEASFQFQANGMKSEGLMNTCSWGGAVQLQNHSSMDFNTYPLTSFSQDLTAATYDVFRHI 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g1733 345 CDD SANT 70 109 IPR001005 -
Prci9g1733 345 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Prci9g1733 345 SMART sant 13 63 IPR001005 -
Prci9g1733 345 SMART sant 66 114 IPR001005 -
Prci9g1733 345 CDD SANT 17 61 IPR001005 -
Prci9g1733 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Prci9g1733 345 Gene3D - 11 67 - -
Prci9g1733 345 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Prci9g1733 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Prci9g1733 345 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Prci9g1733 345 PANTHER MYB DOMAIN PROTEIN 55 1 283 - -
Prci9g1733 345 FunFam Transcription factor MYB86 69 137 - -
Prci9g1733 345 Gene3D - 69 143 - -
Prci9g1733 345 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Prci9g1733 345 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Prci9g1733 345 FunFam MYB transcription factor 11 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g1733 Prci-Chr9 29370355 29371955 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g1733 1 141 MYB Transcription Factor Family AT1G57560 76.596 1.55e-79 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci9g1733 Myb_DNA-binding 7.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g1733 K09422 - qsu:112035668 380.948