Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g1728 ATGGCATCAAGCTCTTACTCATCTCCTTGCGCGGCCTGCAAATTCCTGAGAAGAAAGTGCATGCCAGGTTGCATCTTCGCGCCCTACTTCCCTCCCGAGGAGCCTCAAAAATTCGCCCACGTGCACAAAATCTTCGGTGCCAGCAACGTGACCAAGCTGCTCAACGAGCTCCTCCCTCACCAGAGAGAAGACGCCGTCAACTCGCTCGCCTACGAAGCAGAGGCGCGCGTGAGGGACCCAGTGTATGGTTGCGTCGGAGCCATCTCTTTCCTTCAGAGACAGGTCCAGAGGCTGCAGAAGGAGCTCGATGCTGCTAATGCTGATCTTCTTCGCTATGCCTGCAACGAGATCCCTCCTGCTAATTCTCTCTCTGCGGTGCCACCTGGCTTGGGAATAACGCCTTCAACGCTTCAAGTTCAACCGCTGCCCCAGAGGCAAAGGTCGACGGCTATGGAGTATATTAATGGAAGAATCGGCAATACTGAAGGAGGAGCAGGAGGAGGTGGGGGGTTGTACAGGCAATTTCCTGCTGCTTATAATTACTCTCTTCCTTATACTATTCCATGGGCTGATACAGCTTCGGATGCCATCGATGGAGGTGCTGCGGGTGGTGGTGGAGGTAATTTGTAA 630 0.5381 MASSSYSSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFAHVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLLRYACNEIPPANSLSAVPPGLGITPSTLQVQPLPQRQRSTAMEYINGRIGNTEGGAGGGGGLYRQFPAAYNYSLPYTIPWADTASDAIDGGAAGGGGGNL 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g1728 209 Coils Coil 88 115 - -
Prci9g1728 209 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 7 136 - -
Prci9g1728 209 Pfam Lateral organ boundaries (LOB) domain 9 106 IPR004883 -
Prci9g1728 209 ProSiteProfiles LOB domain profile. 8 109 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g1728 Prci-Chr9 29330554 29332941 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g1728 2 146 AS2 family AT5G63090 76.552 2.37e-74 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Prci9g1728 LOB 9.3e-42 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci4g2811 4 40195773 40197920 Prci9g1728 9 29330554 29332941 CCT
Prci4g2811 4 40195773 40197920 Prci9g1728 9 29330554 29332941 ECH
Prci9g1728 9 29330554 29332941 Prci9g1728 9 29330554 29332941 ECH