Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g1658 ATGGGTTTTTCTTGTCGATGCTCGCCACCAGCGTCGCACCCTCACCTTCACTCCCTCCCTCTCATACAGAGGATTATAATTCTATTTGTTTTCTTAAGTCATTTGACTTATAGAGTTATTGTCGCGATTAATTGGAAGCGGTATCATACCTGTACACACCCTTTGCACATATGGATTGTGGTTGACTACTCTACTGTGTTTATCTTTCGGTTGATGATGTTTGTTGATAATGGACTTTCTGCCGGAATGGGTTTAGACTTTGGGTGGCAACAGAGATATGCCCGCTTCTGTGGAAGAGTAGTGGTCCTTTCAATACTTGCTTTGCTTCTATATCCATTTCTTTGGGCTTGGACTATCATTGGTACATTGTGGTTCACTAGTGCCAGGAACTGCTTGCCTGAAGAAGGTCAGAAATGGGGCTTCCTCATCTGGTTACTTTTCAGCTACTGTGGACTACTTTGCGTTGCTTGCATGTCATTAGGCAAGTGGTTGGCCCGAAGACAAGCACATTTGTTACGTGCCCAGCAGGGTATTCCTGTGTCTGAATATGGAGTTCTGGTGGACATGATCCGAGTGCCTGATTGGGCATTTGAAGCTGCTGGTCAGGAAACAAGGGGTATGGGCCAAGATGCTGGCGCATATCATCCTGGTCTATACCTAACCCCGGCTCAGAGAGAAGCAGTTGAAGCTTTAATTCAGGAACTCCCAAAGTTCAGGTTGAAGGCTGTTCCAACTGACTGTAGTGAATGCCCCATCTGCTTAGAAGAATTCCACGAGGGGAATGAGGTCCGTGGTCTGCCTTGCGCTCATAATTTTCATGTTGAATGCATTGATGAGTGGCTTCGCCTTAATGTAAAATGTCCTCGGTGCCGCTGTTCAGTATTTCCAAATCTTGACCTTAGTGCTCTGTCCAATCTCCGTCCTGAATCAGAACGATCTTCTGCCAGTGTTGTAACGACAACAAGATATGTGAGAGGTCAACCCTCTAGTCAGAGTTATTTGTTGAGATTACAGGGTCTGCTCCGCCCAGTGCGTTCAGAAATCGCTGGGCCGGGTGGTGAGGTGCGTAATACTTCACAAAATGCAGAGAATGGTAGTGTGCCTGTCGTAACACGAAATGCATCAATTGGAGACCAAGGCCGTTCAGTCGAATGCATGCCTGTCAGTCTCTCCTCTGCACCAAACTAG 1188 0.4672 MGFSCRCSPPASHPHLHSLPLIQRIIILFVFLSHLTYRVIVAINWKRYHTCTHPLHIWIVVDYSTVFIFRLMMFVDNGLSAGMGLDFGWQQRYARFCGRVVVLSILALLLYPFLWAWTIIGTLWFTSARNCLPEEGQKWGFLIWLLFSYCGLLCVACMSLGKWLARRQAHLLRAQQGIPVSEYGVLVDMIRVPDWAFEAAGQETRGMGQDAGAYHPGLYLTPAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHEGNEVRGLPCAHNFHVECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRPESERSSASVVTTTRYVRGQPSSQSYLLRLQGLLRPVRSEIAGPGGEVRNTSQNAENGSVPVVTRNASIGDQGRSVECMPVSLSSAPN 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g1658 395 SMART ring_2 250 290 IPR001841 -
Prci9g1658 395 SUPERFAMILY RING/U-box 232 299 - -
Prci9g1658 395 FunFam E3 ubiquitin-protein ligase SIS3 218 296 - -
Prci9g1658 395 Pfam Ring finger domain 249 291 IPR001841 -
Prci9g1658 395 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 219 296 IPR013083 -
Prci9g1658 395 ProSiteProfiles Zinc finger RING-type profile. 250 291 IPR001841 -
Prci9g1658 395 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 30 374 IPR044793 GO:0004842|GO:0010182
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g1658 Prci-Chr9 28868907 28873350 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g1658 73 375 C3H Transcription Factor Family AT3G47990 72.549 2.23e-158 446
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g1658 K16284 - gmx:100812016 667.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci9g1658 9 28868907 28873350 Prci9g1658 9 28868907 28873350 ECH