Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g1657 ATGTTGTGGCCCGTATTCTACATCTTCCTCAACTGTATTACTGTTTTGCTCGCTCTCCATCCTCCCTGCACCGTTTGTTCATCTGTTTCTCGGCCTGTGCAGATATTTTGGCCTTCGTCACGCGATCCCATTCATGAAGTATTTCACTTCGATTTCCCTGTATCTGGTTCATGCATTTTCGGCTGGTACATTATAATCCTCGAAGGCTTCATTTTAGGGTTTTCTAAAATTGGTTGCCCTTCCATGGCTATCAGAGGAGTCGATTTTAAGTGGTACGATGGGTTTTTCTTGTCGATGCTCGCCACCAGCGTAGTTATTGTCGCGATTAATTGGAAGCGGTATCATACCTGTACACACCCTTTGCACATATGGATTGTGGTTGACTACTCTACTGTGTTTATCTTTCGGTTGATGATGTTTGTTGATAATGGACTTTCTGCCGGAATGGGTTTAGACTTTGGGTGGCAACAGAGATATGCCCGCTTCTGTGGAAGAGTAGTGGTCCTTTCAATACTTGCTTTGCTTCTATATCCATTTCTTTGGGCTTGGACTATCATTGGTACATTGTGGTTCACTAGTGCCAGGAACTGCTTGCCTGAAGAAGGTCAGAAATGGGGCTTCCTCATCTGGTTACTTTTCAGCTACTGTGGACTACTTTGCGTTGCTTGCATGTCATTAGGCAAGTGGTTGGCCCGAAGACAAGCACATTTGTTACGTGCCCAGCAGGGTATTCCTGTGTCTGAATATGGAGTTCTGGTGGACATGATCCGAGTGCCTGATTGGGCATTTGAAGCTGCTGGTCAGGAAACAAGGGGTATGGGCCAAGATGCTGGCGCATATCATCCTGGTCTATACCTAACCCCGGCTCAGAGAGAAGCAGTTGAAGCTTTAATTCAGGAACTCCCAAAGTTCAGGTTGAAGGCTGTTCCAACTGACTGTAGTGAATGCCCCATCTGCTTAGAAGAATTCCACGAGGGGAATGAGGTCCGTGGTCTGCCTTGCGCTCATAATTTTCATGTTGAATGCATTGATGAGTGGCTTCGCCTTAATGTAAAATGTCCTCGGTGCCGCTGTTCAGTATTTCCAAATCTTGACCTTAGTGCTCTGTCCAATCTCCGTCCTGAATCAGAACGATCTTCTGCCAGTGTTGTAACGACAACAAGATATGTGAGAGGTCAACCCTCTAGTCAGAGTTATTTGTTGAGATTACAGGGTCTGCTCCGCCCAGTGCGTTCAGAAATCGCTGGGCCGGGTGGTGAGGTGCGTAATACTTCACAAAATGCAGAGAATGGTAGTGTGCCTGTCGTAACACGAAATGCATCAATTGGAGACCAAGGCCGTTCAGTCGAATGCATGCCTGTCAGTCTCTCCTCTGCACCAAACTAG 1386 0.4668 MLWPVFYIFLNCITVLLALHPPCTVCSSVSRPVQIFWPSSRDPIHEVFHFDFPVSGSCIFGWYIIILEGFILGFSKIGCPSMAIRGVDFKWYDGFFLSMLATSVVIVAINWKRYHTCTHPLHIWIVVDYSTVFIFRLMMFVDNGLSAGMGLDFGWQQRYARFCGRVVVLSILALLLYPFLWAWTIIGTLWFTSARNCLPEEGQKWGFLIWLLFSYCGLLCVACMSLGKWLARRQAHLLRAQQGIPVSEYGVLVDMIRVPDWAFEAAGQETRGMGQDAGAYHPGLYLTPAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHEGNEVRGLPCAHNFHVECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRPESERSSASVVTTTRYVRGQPSSQSYLLRLQGLLRPVRSEIAGPGGEVRNTSQNAENGSVPVVTRNASIGDQGRSVECMPVSLSSAPN 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g1657 461 Pfam Ring finger domain 315 357 IPR001841 -
Prci9g1657 461 SUPERFAMILY RING/U-box 298 365 - -
Prci9g1657 461 ProSiteProfiles Zinc finger RING-type profile. 316 357 IPR001841 -
Prci9g1657 461 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 82 440 IPR044793 GO:0004842|GO:0010182
Prci9g1657 461 FunFam E3 ubiquitin-protein ligase SIS3 284 362 - -
Prci9g1657 461 SMART ring_2 316 356 IPR001841 -
Prci9g1657 461 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 285 362 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g1657 Prci-Chr9 28868758 28873350 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g1657 139 441 C3H Transcription Factor Family AT3G47990 72.549 6.23e-157 445
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g1657 K16284 - gmx:100812016 712.22