Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g1651 ATGATCAATGCATCCAATCAATCAGGCCGCCGTATTCTGTCATTCCCGGCGGTTCATCCCTGCGAAGGCGTGTCTCCGGCCGCCCTTCTCGCTTCTCTGATCTCACTCTCTCAGACCATATGCAGTTTCCAATCCGAGTTCTTCCCCACCCAACGTCGAAATTCCAGAGAGATAATTCGCCAACTTGGTATCATCCTCCTCTTCCTGGAGGAAATTCGAGATCGTGGTGTCCCTGTAAGGGACTCTGTTGCTCTCTGCTTCTCCGAGCTTCACCTTACTCTCCAAAAAATTCACTTTTTGCTCTCAGATTGTACTCGTGATGGTGCTCGGCTGTGGATGCTCATGAAATCGGAACACGTCGCCACTCAATTCAGGGTTCTGACTCGCGCGTTAGCAACTGCTCTTGATATTCTGCCTCTGAGTAGCATCGAGATTTGTGACGAAGTAAAGGAGGTAGTGGAATTAGTTGCTAAGCAAGCTCAGAAAGTGAGGCTCGAACTAGACCCACACGATGAACTCGCCACCAAGCAGGTCCTCTCAGTTTTGAATCAGTTCGATAGAGGAAAAGAACCCAACTTGAGTACCGTGAAGAGAACCTTGAGCTACTTGGGAATACAAAATTGGAATGATTGCAACAAAGAGATTAAATTCTTGGAAGATGAAATCAACTTTACCTACTCTGAAGGTGACGAGAGGGAGGTTCCTTTTCTGAGTAGTTTAGTTGGGTATTTATGCTATTGCAGGGTAGTGATTTTCGAAACTCTGGATTTTCAACAAACCGCCACTGACCCATCGGAGATGAGGTATAGCACGGAGATGATTAACTTCATAAACCCACAGGACTTTCGATGTCCGATCTCTTTGCAACTGATGACCGATCCTGTGACTGTATCAACTGGCCAGACGTACGATCGAGCATCCATTCAGAAATGGCTCCAAGCTGGAAACAGGACATGCCCAAAAACAGGGGAGAAGCTCGCAAACACGGAGCTCCTCCCAAACACGACCCTCAGAAAGCTAATCCACCAGTTCTGTGCCGATAACAGAGTTTCCGCCGCCAAGTCCGGTCACCGGAGTCGCGACATAACGAGAACCATCGTCCCCGGTAGTACAGCTTCGGCACACGCCATGCAATTCCTTTCATGGTTCATTGCTAGGAGGCTTGTCTTCGGAACAGATGAGCAGAAAAACAAGGCAGCTTACGAAATTCGAGTGCTTGCAAGGTCCAACATTTTCAACAGAGCATGTTTGGTTGAAGTCGGAACAGTGCCCTCGTTAATCAATCTCCTGGACTCGGATGATAAATCAACACAAGAGAACGCAATCTCCGCTCTACTGAAGTTGGCAAAGCACACCAATGGACAGAAAACGATAATGGAAAGTGATGGACTAACACCAATCCTCGTGGTTCTCAAAAATGGAATTACTTTAGAAGCTCGTCAGACTGCAGCTGCTGTAATATTCTACCTTTCTTCCACGAGAGAAAACAGGAAAATAATTGGAGAGAACCCTGAAGTAATCCCAGCGTTGGTAGAACTAATCAAGGAAGAAACAACAGCCTTCGGGAAAAAGAATGCCATAGTCGCCATTTTCGGGCTTCTCTTGCTTCCCCAGAATCATCAGAAAGTGCTTGACGCTGATACTGTTCCCACGCTAGTCAGTATCTTAGCTTCGTCAGAAAAATCCGACCTTACCACAGATTGTTTGGCGGTTCTTGCAGCGTTGGCGGAGAACTTGGAGGGAGCAAACGCTATGTCAAAAGCATGTGCTTTGCCTTTGATCTTGGGGATGTTGCAGACAGTAACACGGCGCGCAGAGAAAGAACATTGTGTGGCTATTTTGATGTCGATGTGCATGCATATCGGAGAAGAGGTGGTGGGTGTTCTGGCGAAGGATCCTTCGTTGATGCCATGGCTTTACTCGCTGCTCACCGATGGTACTTCTCATGCGGCCAAGAAGGCGCGTTCTCTGATCAGAGTTCTTCAGGAATTCAACGAAACTAGAACTTCTAGGTGGGTTGGATCGTCCGTCGTGCCAGAACGATCCCTTCACATTTGGTGA 2061 0.476 MINASNQSGRRILSFPAVHPCEGVSPAALLASLISLSQTICSFQSEFFPTQRRNSREIIRQLGIILLFLEEIRDRGVPVRDSVALCFSELHLTLQKIHFLLSDCTRDGARLWMLMKSEHVATQFRVLTRALATALDILPLSSIEICDEVKEVVELVAKQAQKVRLELDPHDELATKQVLSVLNQFDRGKEPNLSTVKRTLSYLGIQNWNDCNKEIKFLEDEINFTYSEGDEREVPFLSSLVGYLCYCRVVIFETLDFQQTATDPSEMRYSTEMINFINPQDFRCPISLQLMTDPVTVSTGQTYDRASIQKWLQAGNRTCPKTGEKLANTELLPNTTLRKLIHQFCADNRVSAAKSGHRSRDITRTIVPGSTASAHAMQFLSWFIARRLVFGTDEQKNKAAYEIRVLARSNIFNRACLVEVGTVPSLINLLDSDDKSTQENAISALLKLAKHTNGQKTIMESDGLTPILVVLKNGITLEARQTAAAVIFYLSSTRENRKIIGENPEVIPALVELIKEETTAFGKKNAIVAIFGLLLLPQNHQKVLDADTVPTLVSILASSEKSDLTTDCLAVLAALAENLEGANAMSKACALPLILGMLQTVTRRAEKEHCVAILMSMCMHIGEEVVGVLAKDPSLMPWLYSLLTDGTSHAAKKARSLIRVLQEFNETRTSRWVGSSVVPERSLHIW 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g1651 686 SMART Ubox_2 281 344 IPR003613 GO:0004842|GO:0016567
Prci9g1651 686 Gene3D - 384 526 IPR011989 -
Prci9g1651 686 PANTHER U BOX DOMAIN-CONTAINING 78 661 - -
Prci9g1651 686 Pfam Armadillo/beta-catenin-like repeat 413 449 IPR000225 GO:0005515
Prci9g1651 686 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 421 463 IPR000225 GO:0005515
Prci9g1651 686 SUPERFAMILY RING/U-box 272 350 - -
Prci9g1651 686 ProSiteProfiles U-box domain profile. 277 351 IPR003613 GO:0004842|GO:0016567
Prci9g1651 686 FunFam RING-type E3 ubiquitin transferase 278 350 - -
Prci9g1651 686 CDD RING-Ubox_PUB 279 331 IPR045210 -
Prci9g1651 686 Pfam U-box domain 279 349 IPR003613 GO:0004842|GO:0016567
Prci9g1651 686 FunFam RING-type E3 ubiquitin transferase 358 672 - -
Prci9g1651 686 SMART arm_5 452 492 IPR000225 GO:0005515
Prci9g1651 686 SMART arm_5 409 450 IPR000225 GO:0005515
Prci9g1651 686 SMART arm_5 536 577 IPR000225 GO:0005515
Prci9g1651 686 SUPERFAMILY ARM repeat 394 662 IPR016024 -
Prci9g1651 686 Gene3D - 527 661 IPR011989 -
Prci9g1651 686 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 352 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g1651 Prci-Chr9 28838634 28841170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g1651 1 686 U-box Gene Family AT1G60190 39.311 8.73e-170 500
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g1651 - - cit:102613373 872.078