Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g1628 ATGGGTGGCAATGGCCGGTCCAGGTGGAAAATATCTTTCCATCGTAATTCTCCAAGCTCGAAGCTCGAACCGAAAGAGCCCCCCATCGAGTTTATATGCCCAATTTCTGGGTCTCTGATAGCCGAACCCGTCGTAGTCGCTTCCGGCCAGACATTTGAATCTGTTTCTGTTCAAGTGTGCAGAGACTTTGGTTTCTCTCCCAAGCTACAAGACGGGTCGACGCCTGATTTTTCCACTGTAATTCCGAATTTGGCTCTCAAATCCACGATATCCAATTGGTGCGTTAAATCTGGCGTAGAGAACCCTCGCCCGCCAGACTATAGCTCCGTGGAGAGGCTTGTCCGTGCAGCAATGGCGTCAACGCGCGAAAAGCAGGAGTCAGATTTGAGGATTTCGGATAGGGAATTGCTCAAGGCCGTGCCGGATAATCCACCGGTCATTTTCTCTCATGCCGCCACGGAGGTGGGTCCCCGGGTAAACCAGTTCGAAACGAGTTCGTCCGAGGTGTCGGCAGTCGCCGCGGGGTGTCCCGAGACTCCTTTGCCCCTCGCGACTCGTCCTACCTGTTACTCTTCTTCGTCGTCTTCTATCGAAATTAACGAGAATGAACAACAAAACCAGAACCCTATCGGTCCACTTTCCGAGGGAGAGGAAAAATTAGTGCTGAAGCTAAGGAGCGAAGAAGCTTCTGAGCAAGAAGAAGCGGCTATCTCGCTGAGAAACATCACCAAGACAAGAGAGGACACAAGAATTTCACTTTGCACGCCCGCGTTGCTGTCATCACTCCGATCACTGATCCCGTCGAAGCATCGCGTCGTGCAAGTAAACGCCGTTGCTTCGCTGGTTAATTTCTCCCTGGAGAAATCGAACAAAGTGAAGATTGTAAGGTCTGGATTCATCCCTTCCCTCATCGATGTCTTGAAAAATGGATTCCCTGAGGCGCAGGAGCACGCAGCGGGAGCACTATTCAGCTTGGCCTTGGACGACGAGAACAAAATGGCGATCGGAGTACTGGGCGCGCTGGAGCCGCTCATGAACGCGTTGAGGTCGGAGTCGGAACGGACCCGGCACGACTCGGCGCTAGCGCTGTACCACCTGACCTTGGTTCAGAGCAACAGGGTGAAGCTGGTGAAGCTCGGGGTGGTGCCGACGCTGCTATCAATGGTGAAATCGGGGGATCTGGCGAGCCGTGTTTTGCTGATTCTGTGTAATATTGCGGCGGGGACGGAGGGGCGAACGGCGATGCTGGACGCGAATGCGGTGGAGTGCTTGGTGGGTGTGCTGAGGGAAAAGAAGGGGGTGGAATGGGAAGCGACGAGGGAACACTGTGTGGCGGCGTTGTGTGGAATGAGCCATGGGAGCTTAAGGTTCAAAGCTTTGGCGAAGGAAGCAAGAGCTGTGGAAGTGTTGAGGGAGGTTGAAGGGGGAGGATCAGACAGGGCGCGAGAGAAGGCCAGGAGGATGCTGCAGATGATGAGAGCGGAAGGAGAAGAGGATGACGAAAATGGCGTCGCTTCTGTTGGGGCATTGGACTCGGGCGGGTTGAGTCGAACCCGGTTCCGAGTTGGTGGCGGAAGGAATGTGAACGCGGCCAACACCACCACGTTTTAG 1611 0.5456 MGGNGRSRWKISFHRNSPSSKLEPKEPPIEFICPISGSLIAEPVVVASGQTFESVSVQVCRDFGFSPKLQDGSTPDFSTVIPNLALKSTISNWCVKSGVENPRPPDYSSVERLVRAAMASTREKQESDLRISDRELLKAVPDNPPVIFSHAATEVGPRVNQFETSSSEVSAVAAGCPETPLPLATRPTCYSSSSSSIEINENEQQNQNPIGPLSEGEEKLVLKLRSEEASEQEEAAISLRNITKTREDTRISLCTPALLSSLRSLIPSKHRVVQVNAVASLVNFSLEKSNKVKIVRSGFIPSLIDVLKNGFPEAQEHAAGALFSLALDDENKMAIGVLGALEPLMNALRSESERTRHDSALALYHLTLVQSNRVKLVKLGVVPTLLSMVKSGDLASRVLLILCNIAAGTEGRTAMLDANAVECLVGVLREKKGVEWEATREHCVAALCGMSHGSLRFKALAKEARAVEVLREVEGGGSDRAREKARRMLQMMRAEGEEDDENGVASVGALDSGGLSRTRFRVGGGRNVNAANTTTF 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g1628 536 SMART arm_5 328 368 IPR000225 GO:0005515
Prci9g1628 536 SMART arm_5 287 327 IPR000225 GO:0005515
Prci9g1628 536 SMART arm_5 408 452 IPR000225 GO:0005515
Prci9g1628 536 SMART arm_5 369 407 IPR000225 GO:0005515
Prci9g1628 536 SUPERFAMILY RING/U-box 16 103 - -
Prci9g1628 536 MobiDBLite consensus disorder prediction 187 214 - -
Prci9g1628 536 ProSiteProfiles U-box domain profile. 26 100 IPR003613 GO:0004842|GO:0016567
Prci9g1628 536 MobiDBLite consensus disorder prediction 187 212 - -
Prci9g1628 536 FunFam RING-type E3 ubiquitin transferase 215 492 - -
Prci9g1628 536 SUPERFAMILY ARM repeat 217 492 IPR016024 -
Prci9g1628 536 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 26 100 IPR013083 -
Prci9g1628 536 Gene3D - 216 491 IPR011989 -
Prci9g1628 536 SMART Ubox_2 30 93 IPR003613 GO:0004842|GO:0016567
Prci9g1628 536 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 298 335 IPR000225 GO:0005515
Prci9g1628 536 PANTHER U BOX DOMAIN-CONTAINING 23 493 - -
Prci9g1628 536 Pfam U-box domain 28 95 IPR003613 GO:0004842|GO:0016567
Prci9g1628 536 MobiDBLite consensus disorder prediction 1 25 - -
Prci9g1628 536 Pfam Armadillo/beta-catenin-like repeat 290 326 IPR000225 GO:0005515
Prci9g1628 536 Pfam Armadillo/beta-catenin-like repeat 328 367 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g1628 Prci-Chr9 28745741 28748944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g1628 1 536 U-box Gene Family AT5G65200 53.014 0.0 540
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g1628 - - aip:107643932 667.537