Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g1546 ATGTACGTCATGGGAAGGCCACCTTGCTGCGACAAAATTGGGATCAAGAAGGGCCCTTGGACTCCCGAAGAAGACATCATCCTCGTCTCTTACATTCAAGAGCACGGACCTGGTAATTGGAGATCTGTTCCCACTAAAACAGGTTTGATGAGATGCAGCAAGAGTTGCAGACTCCGATGGACCAACTATCTTCGTCCCGGTATTAAAAGAGGCAACTTCACTGATCACGAGGAAAAAATGATCATCCATCTCCAAGCTCTGCTCGGCAACAGATGGGCTGCTATAGCTTCGTATCTTCCACAGAGGACGGACAATGACATCAAGAATTATTGGAACACCCATTTGAAGAAGAAGCTGAAAAGGCTCCACACTGGGACTGAGGGTGACGACCAAGAAGACGACTCGTTCTCGCAGCCCAAGGGCCAGTGGGAGAGAAGGCTTCAAACAGATATCCACATGGCCAAACAGGCTCTTTGCGAGGCTCTGTCTCTGGACAAGCCGATGACCGAAACCGATACCAAGCCCTCCGATTCCACGATCCAAACATCCCCTTATGCCTCAAGCACCGAAAACATAGCCCGATTGCTCCAGAACTGGATGAACCAATCCCCGAAGGACCCGACTCAACAAACAAGTTCACCGCCAGGAGCTCGCTTCATCAACACCGCCACGGCGGGTTCCAGTTCGTCCAGCGAAGCTGCGACGTATAATAGCAACAATAACAACCACGTTCTGGATTCTCTATGGAGCTTCAGCTCTAATGCTTCCCAACAATCCGTGTCTGCGGATGACAACACCACGAACAATAGCTTGTTCCAGGACGAAAGCAAGCTTAGCTCGGAGTCGCAGCTTCCTCTGACTCTGATCGAGAAGTGGCTTTTCGATGATGCGGTGGCTCAGAACCAGGAAGACCTAATCAATGAGTCGCTTCTGGAAGAAACTACTCCGCAGTTGTACTTCTAG 963 0.5036 MYVMGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTKTGLMRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKRLHTGTEGDDQEDDSFSQPKGQWERRLQTDIHMAKQALCEALSLDKPMTETDTKPSDSTIQTSPYASSTENIARLLQNWMNQSPKDPTQQTSSPPGARFINTATAGSSSSSEAATYNSNNNNHVLDSLWSFSSNASQQSVSADDNTTNNSLFQDESKLSSESQLPLTLIEKWLFDDAVAQNQEDLINESLLEETTPQLYF 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g1546 320 MobiDBLite consensus disorder prediction 202 238 - -
Prci9g1546 320 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Prci9g1546 320 Gene3D - 72 149 - -
Prci9g1546 320 FunFam Transcription factor MYB30 71 129 - -
Prci9g1546 320 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 247 - -
Prci9g1546 320 Gene3D - 16 69 - -
Prci9g1546 320 MobiDBLite consensus disorder prediction 258 277 - -
Prci9g1546 320 MobiDBLite consensus disorder prediction 122 143 - -
Prci9g1546 320 SUPERFAMILY Homeodomain-like 14 111 IPR009057 -
Prci9g1546 320 CDD SANT 72 115 IPR001005 -
Prci9g1546 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 119 IPR017930 -
Prci9g1546 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 68 IPR017930 -
Prci9g1546 320 CDD SANT 19 64 IPR001005 -
Prci9g1546 320 SMART sant 16 66 IPR001005 -
Prci9g1546 320 SMART sant 69 117 IPR001005 -
Prci9g1546 320 FunFam MYB-related transcription factor 16 69 - -
Prci9g1546 320 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Prci9g1546 320 Pfam Myb-like DNA-binding domain 70 115 IPR001005 -
Prci9g1546 320 MobiDBLite consensus disorder prediction 163 186 - -
Prci9g1546 320 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g1546 Prci-Chr9 28220098 28221717 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g1546 4 296 MYB Transcription Factor Family AT5G62470 51.445 1.64e-111 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci9g1546 Myb_DNA-binding 5.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g1546 K09422 - qsu:111987893 399.823