Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g1543 ATGAAGAAGAGACAGGTGGTCGTGAAGAGGGATGTGGCCAAGACGTCGTCGTCGGTGATGAGGAACGTCAGATATTTGGAGTGTCAGAAGAATCACGCGGCCAACATAGGAGGCTACGCCGTGGATGGTTGCAGAGAGTTCATGGCCAGTGGTGATGACGTCACTGCCGGAGCTCTTACCTGTGCTGCTTGTGGCTGTCACAGGAATTTCCACAGAAGAGAAGTTCAGACCGAGGTTGTCTTTTATATTTGTGAAAGAAATCAAGGGTTGGGGCACAGAAACTATCCCGTGTTGGTTAATGTATTGTTGATCTCCATTTAA 321 0.486 MKKRQVVVKRDVAKTSSSVMRNVRYLECQKNHAANIGGYAVDGCREFMASGDDVTAGALTCAACGCHRNFHRREVQTEVVFYICERNQGLGHRNYPVLVNVLLISI 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g1543 106 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 5 78 - -
Prci9g1543 106 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 24 75 IPR006456 -
Prci9g1543 106 Pfam ZF-HD protein dimerisation region 22 75 IPR006456 -
Prci9g1543 106 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 25 74 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g1543 Prci-Chr9 28207021 28210549 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g1543 1 80 Zinc finger-homeobox gene family AT1G18835 77.778 2.30e-36 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Prci9g1543 ZF-HD_dimer 1.3e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g1543 - - pcin:129319329 214.927