Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g1533 ATGGGAAGAGTTAAACTAAAGATAAAGAAATTAGAGAGCATTAGCAATCGACAAGTAACTTTTTCAAAGCGAAAGAGTGGAATATTGAAGAAAGCCAAGGAATTGTCAATATTATGTGATATAGACATTGCCCTTCTCATGTTTTCTCCGACAGGGAAGCCTATATTACTACAAGGAGAGCGTAGCAATCTTGAAGAGGTCATCGAAAAATTTGCTCAACTAAGTCCACAAGAAAGGGCCAAGAGGAAATTGGAAAGCCTTGAAGCACTAAAAAAAACCTTTAAGAAGTTGGATCATGATGTAAAAATACAAGATTTCTTAGGTTCAAGCAGCCAACAAGTTGAGGAATTGACTCATCATTTGAGAGTGCTACAAGCTCAGCTTGCTGAAGTACACCAGAGATTGAGCTATTGGAATAATGTAGAAAAGATCAATAATGTTGAACATCTTAGGCAAATGGAAGACTTACTAAGGGAGTTAATCAATCGAGTATGTCTACGTAAGGAAAATTTGGGAAAACACCAACTAATGTCACTTGATTGCACTAACCAGTTACAGGAAGGCATAACTTTACCCCTGATGATGGCCAGTCTACAAGAAGCCCAACCCCTAGCTTGGCTGTTAAATAATGATAATAGTCAATTGATTCTACCTTCTGAACCAAAATTTATTCCATTTAGTGATAATCTCAATAGAGATGCCGAGTGCTCCATTAATGTTTCACTACCAAGCTATTCTGGTTATATAAGCACTGCCAAACTTGAGGTTGGCAACTCACCTCATGTTGCTACTTTAGGTCAAGGTAGTGGTGGTACCTTAAATGAGTTTAATGAAGGTGCTTGTTTGAGTACACAACGTTGTGAGCAGTTTTCATACCCACCACCACTGGATAGTGAGGAACAGAAGCATCATCCGACTATGAATGGTAGACCAAGCCCTGTGGATTATCAAGTTAATAACAGTTTTGATTTGCCTAAATCCATCTTTGAAAATGGACATCAATTCTGGAATTCTACTTCTACACCTTGTGGCATTGCCATGTACAATGAGAATGGCTACCATCAATGA 1068 0.383 MGRVKLKIKKLESISNRQVTFSKRKSGILKKAKELSILCDIDIALLMFSPTGKPILLQGERSNLEEVIEKFAQLSPQERAKRKLESLEALKKTFKKLDHDVKIQDFLGSSSQQVEELTHHLRVLQAQLAEVHQRLSYWNNVEKINNVEHLRQMEDLLRELINRVCLRKENLGKHQLMSLDCTNQLQEGITLPLMMASLQEAQPLAWLLNNDNSQLILPSEPKFIPFSDNLNRDAECSINVSLPSYSGYISTAKLEVGNSPHVATLGQGSGGTLNEFNEGACLSTQRCEQFSYPPPLDSEEQKHHPTMNGRPSPVDYQVNNSFDLPKSIFENGHQFWNSTSTPCGIAMYNENGYHQ 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g1533 355 Coils Coil 77 97 - -
Prci9g1533 355 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 196 - -
Prci9g1533 355 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Prci9g1533 355 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 54 IPR002100 GO:0003677|GO:0046983
Prci9g1533 355 FunFam Agamous-like MADS-box protein AGL30 14 96 - -
Prci9g1533 355 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci9g1533 355 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci9g1533 355 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci9g1533 355 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Prci9g1533 355 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci9g1533 355 Coils Coil 114 134 - -
Prci9g1533 355 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g1533 Prci-Chr9 28158354 28162721 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g1533 1 279 Type I MADS-box Gene Family AT2G03060 50.347 2.03e-85 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Prci9g1533 SRF-TF 5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g1533 - - pvu:PHAVU_003G189100g 568.926