Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Prci9g1531 | ATGGGAAGAGTTAAACTAAAGATAAAGAAATTAGAGAGCATTAGCAATCGACAAGTAACTTTTTCAAAGCGAAAGAGTGGAATATTGAAGAAAGCCAAGGAATTGTCAATATTATGTGATATAGACATTGCCCTTCTCATGTTTTCTCCGACAGGGAAGCCTATATTACTACAAGGAGAGCGTAGCAATCTTGAAGAGGTCATCGAAAAATTTGCTCAACTAAGTCCACAAGAAAGGGCCAAGAGGAAATTGGAAAGCCTTGAAGCACTAAAAAAAACCTTTAAGAAGTTGGATCATGATGTAAAAATACAAGATTTCTTAGGTTCAAGCAGCCAACAAGTTGAGGAATTGACTCATCATTTGAGAGTGCTACAAGCTCAGCTTGCTGAAGTACACCAGAGATTGAGCTATTGGAATAATGTAGAAAAGATCAATAATGTTGAACATCTTAGGCAAATGGAAGACTTACTAAGGGAGTTAATCAATCGAGTATGTCTACGTAAGTTACAGGAAGGCATAACTTTACCCCTGATGATGGCCAGTCTACAAGAAGCCCAACCCCTAGCTTGGCTGTTAAATAATGATAATAGTCAATTGATTCTACCTTCTGAACCAAAATTTATTCCATTTAGTGATAATCTCAATAGAGATGCCGAGTGCTCCATTAATGTTTCACTACCAAGCTATTCTGGTTATATAAGCACTGCCAAACTTGAGGTTGGCAACTCACCTCATGTTGCTACTTTAGGTCAAGGTAGTGGTGGTACCTTAAATGAGTTTAATGAAGGTGCTTGTTTGAGTACACAACGTTGTGAGCAGTTTTCATACCCACCACCACTGGATAGTGAGGAACAGAAGCATCATCCGACTATGAATGGTAGACCAAGCCCTGTGGATTATCAAGTTAATAACAGTTTTGATTTGCCTAAATCCATCTTTGAAAATGGACATCAATTCTGGAATTCTACTTCTACACCTTGTGGCATTGCCATGTACAATGAGAATGGCTACCATCAATGA | 1020 | 0.3833 | MGRVKLKIKKLESISNRQVTFSKRKSGILKKAKELSILCDIDIALLMFSPTGKPILLQGERSNLEEVIEKFAQLSPQERAKRKLESLEALKKTFKKLDHDVKIQDFLGSSSQQVEELTHHLRVLQAQLAEVHQRLSYWNNVEKINNVEHLRQMEDLLRELINRVCLRKLQEGITLPLMMASLQEAQPLAWLLNNDNSQLILPSEPKFIPFSDNLNRDAECSINVSLPSYSGYISTAKLEVGNSPHVATLGQGSGGTLNEFNEGACLSTQRCEQFSYPPPLDSEEQKHHPTMNGRPSPVDYQVNNSFDLPKSIFENGHQFWNSTSTPCGIAMYNENGYHQ | 339 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Prci9g1531 | 339 | Coils | Coil | 77 | 97 | - | - | |
Prci9g1531 | 339 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 11 | 54 | IPR002100 | GO:0003677|GO:0046983 | |
Prci9g1531 | 339 | ProSiteProfiles | MADS-box domain profile. | 1 | 53 | IPR002100 | GO:0003677|GO:0046983 | |
Prci9g1531 | 339 | SUPERFAMILY | SRF-like | 2 | 95 | IPR036879 | GO:0003677|GO:0046983 | |
Prci9g1531 | 339 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Prci9g1531 | 339 | Gene3D | - | 14 | 97 | IPR036879 | GO:0003677|GO:0046983 | |
Prci9g1531 | 339 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Prci9g1531 | 339 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Prci9g1531 | 339 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Prci9g1531 | 339 | Coils | Coil | 114 | 134 | - | - | |
Prci9g1531 | 339 | FunFam | Agamous-like MADS-box protein AGL30 | 14 | 96 | - | - | |
Prci9g1531 | 339 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 3 | 189 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Prci9g1531 | Prci-Chr9 | 28158354 | 28162721 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Prci9g1531 | 1 | 263 | Type I MADS-box Gene Family | AT2G03060 | 48.611 | 8.35e-81 | 249 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MADS-M-type | Prci9g1531 | SRF-TF | 4.7e-21 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Prci9g1531 | - | - | pvu:PHAVU_003G189100g | 531.561 |