Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g1530 ATGGGAAGAGTTAAACTAAAGATAAAGAAATTAGAGAGCATTAGCAATCGACAAGTAACTTTTTCAAAGCGAAAGAGTGGAATATTGAAGAAAGCCAAGGAATTGTCAATATTATGTGATATAGACATTGCCCTTCTCATGTTTTCTCCGACAGGGAAGCCTATATTACTACAAGGAGAGCGTAGCAATCTTGAAGAGGTCATCGAAAAATTTGCTCAACTAAGTCCACAAGAAAGGGCCAAGAGGAAATTGGAAAGCCTTGAAGCACTAAAAAAAACCTTTAAGAAGTTGGATCATGATGTAAAAATACAAGATTTCTTAGGTTCAAGCAGCCAACAAGTTGAGGAATTGACTCATCATTTGAGAGTGCTACAAGCTCAGCTTGCTGAAGTACACCAGAGATTGAGCTATTGGAATAATGTAGAAAAGATCAATAATGTTGAACATCTTAGGCAAATGGAAGACTTACTAAGGGAGTTAATCAATCGAGTATGTCTACGTAAGGAAGGCATAACTTTACCCCTGATGATGGCCAGTCTACAAGAAGCCCAACCCCTAGCTTGGCTGTTAAATAATGATAATAGTCAATTGATTCTACCTTCTGAACCAAAATTTATTCCATTTAGTGATAATCTCAATAGAGATGCCGAGTGCTCCATTAATGTTTCACTACCAAGCTATTCTGGTTATATAAGCACTGCCAAACTTGAGGTTGGCAACTCACCTCATGTTGCTACTTTAGGTCAAGGTAGTGGTGGTACCTTAAATGAGTTTAATGAAGGTGCTTGTTTGAGTACACAACGTTGTGAGCAGTTTTCATACCCACCACCACTGGATAGTGAGGAACAGAAGCATCATCCGACTATGAATGGTAGACCAAGCCCTGTGGATTATCAAGTTAATAACAGTTTTGATTTGCCTAAATCCATCTTTGAAAATGGACATCAATTCTGGAATTCTACTTCTACACCTTGTGGCATTGCCATGTACAATGAGAATGGCTACCATCAATGA 1014 0.3836 MGRVKLKIKKLESISNRQVTFSKRKSGILKKAKELSILCDIDIALLMFSPTGKPILLQGERSNLEEVIEKFAQLSPQERAKRKLESLEALKKTFKKLDHDVKIQDFLGSSSQQVEELTHHLRVLQAQLAEVHQRLSYWNNVEKINNVEHLRQMEDLLRELINRVCLRKEGITLPLMMASLQEAQPLAWLLNNDNSQLILPSEPKFIPFSDNLNRDAECSINVSLPSYSGYISTAKLEVGNSPHVATLGQGSGGTLNEFNEGACLSTQRCEQFSYPPPLDSEEQKHHPTMNGRPSPVDYQVNNSFDLPKSIFENGHQFWNSTSTPCGIAMYNENGYHQ 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g1530 337 Coils Coil 77 97 - -
Prci9g1530 337 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Prci9g1530 337 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Prci9g1530 337 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Prci9g1530 337 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci9g1530 337 Coils Coil 114 134 - -
Prci9g1530 337 FunFam Agamous-like MADS-box protein AGL30 14 96 - -
Prci9g1530 337 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 54 IPR002100 GO:0003677|GO:0046983
Prci9g1530 337 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci9g1530 337 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci9g1530 337 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci9g1530 337 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g1530 Prci-Chr9 28158354 28162721 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g1530 1 261 Type I MADS-box Gene Family AT2G03060 48.264 1.76e-80 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Prci9g1530 SRF-TF 4.7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g1530 - - pvu:PHAVU_003G189100g 527.324