Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g1529 ATGGGAAGAGTTAAACTAAAGATAAAGAAATTAGAGAGCATTAGCAATCGACAAGTAACTTTTTCAAAGCGAAAGAGTGGAATATTGAAGAAAGCCAAGGAATTGTCAATATTATGTGATATAGACATTGCCCTTCTCATGTTTTCTCCGACAGGGAAGCCTATATTACTACAAGGAGAGCGTAGCAATCTTGAAGAGGTCATCGAAAAATTTGCTCAACTAAGTCCACAAGAAAGGGCCAAGAGGAAATTGGAAAGCCTTGAAGCACTAAAAAAAACCTTTAAGAAGTTGGATCATGATGTAAAAATACAAGATTTCTTAGGTTCAAGCCAACAAGTTGAGGAATTGACTCATCATTTGAGAGTGCTACAAGCTCAGCTTGCTGAAGTACACCAGAGATTGAGCTATTGGAATAATGTAGAAAAGATCAATAATGTTGAACATCTTAGGCAAATGGAAGACTTACTAAGGGAGTTAATCAATCGAGTATGTCTACGTAAGGAAAATTTGGGAAAACACCAACTAATGTCACTTGATTGCACTAACCAGTTACAGGAAGGCATAACTTTACCCCTGATGATGGCCAGTCTACAAGAAGCCCAACCCCTAGCTTGGCTGTTAAATAATGATAATAGTCAATTGATTCTACCTTCTGAACCAAAATTTATTCCATTTAGTGATAATCTCAATAGAGATGCCGAGTGCTCCATTAATGTTTCACTACCAAGCTATTCTGGTTATATAAGCACTGCCAAACTTGAGGTTGGCAACTCACCTCATGTTGCTACTTTAGGTCAAGGTAGTGGTGGTACCTTAAATGAGTTTAATGAAGGTGCTTGTTTGAGTACACAACGTTGTGAGCAGTTTTCATACCCACCACCACTGGATAGTGAGGAACAGAAGCATCATCCGACTATGAATGGTAGACCAAGCCCTGTGGATTATCAAGTTAATAACAGTTTTGATTTGCCTAAATCCATCTTTGAAAATGGACATCAATTCTGGAATTCTACTTCTACACCTTGTGGCATTGCCATGTACAATGAGAATGGCTACCATCAATGA 1065 0.3822 MGRVKLKIKKLESISNRQVTFSKRKSGILKKAKELSILCDIDIALLMFSPTGKPILLQGERSNLEEVIEKFAQLSPQERAKRKLESLEALKKTFKKLDHDVKIQDFLGSSQQVEELTHHLRVLQAQLAEVHQRLSYWNNVEKINNVEHLRQMEDLLRELINRVCLRKENLGKHQLMSLDCTNQLQEGITLPLMMASLQEAQPLAWLLNNDNSQLILPSEPKFIPFSDNLNRDAECSINVSLPSYSGYISTAKLEVGNSPHVATLGQGSGGTLNEFNEGACLSTQRCEQFSYPPPLDSEEQKHHPTMNGRPSPVDYQVNNSFDLPKSIFENGHQFWNSTSTPCGIAMYNENGYHQ 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g1529 354 Coils Coil 77 97 - -
Prci9g1529 354 FunFam Agamous-like MADS-box protein AGL30 14 96 - -
Prci9g1529 354 Coils Coil 113 133 - -
Prci9g1529 354 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Prci9g1529 354 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Prci9g1529 354 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci9g1529 354 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci9g1529 354 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci9g1529 354 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci9g1529 354 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 195 - -
Prci9g1529 354 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Prci9g1529 354 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 54 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g1529 Prci-Chr9 28158354 28162721 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g1529 1 278 Type I MADS-box Gene Family AT2G03060 50.347 1.02e-83 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Prci9g1529 SRF-TF 5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g1529 - - pvu:PHAVU_003G189100g 563.148