Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Prci9g1512 | ATGAGAAACGTAACTGCACATGAACAAGAAGGTTTGGCATGGGACACATACCATCATATTTTTGAACTTGTGCATAATGGCAACATGTCATTTCGGGAGAATCGGTTGGAAGAGGCAATCAACTTTTACTCAAGAGCAAATAGCATCAAACCTGGTGATCCTGTTATCCTCCACAACCGATGTGCAGCTTATCTTAGGATTAGCAGATTCTTAAAGGACAGATCTCCATCAGCTTCAGAATATAAACCATTGAGTGGGCTTGATCCTACAATACATGCTGAACTTGGTTTGAAGGATGCTGAGAAGCTTGTTGACCTACGTAGTAATTCAGTAAAATCATACCTCTTAAAGGCTAATGCGCTTTTTCTGTTAGAGAAATATGAAAAAGCCCGAGATGCAATTCTTTCAGGCCTTCAAGTCGATCCATTTAGTGAGTCCTTGCAAGCTGGACTTCGAAGTTTGGAGAAGGGATCTGCTAGTTTGATGGGCATGAATAGACATGAAGAACAGCCAGGCACGAGTACTCACGGACAACCAGAGCGCACTGATGACTTTGATTGCACTGTTTGCCTGAAGTTGTTATATGAACCTGTTACAACCCCTTGTGGACATTCTTTTTGCCATTCATGTCTATTTCAGTCAATGGATCATGGCAACAGATGCCCATTGTGCAGGACAGTTCTTTTGATCAGTCCTAGAACGTGTTCCATCAGTGTGACATTGAAGAACATCATACAAAAGAACTTTCCGGAAGAGTATGCCAAAAGGAAGCAAGAGCATGACAGTTTGACAAACTTTGGCGTGGATTTGATTCCTCTTTTTGTCATGGATGTTGTCATGCCATGTCAAAAATTTCCACTCAATATATTTGAACCTCGATATAGACTTATGGTCAGAAGAATAATGGAAGGGAACCATAGGATGGGAATGGCTATAATTGATTCTACAACAGGTTCCTTAGCTGAGTATGCTTGTGAAGTGGAAATTACAGAGTGTGAACCACTTCCAGATGGACGTTTCTATATAGAGATTGAAAGTTGCAGGAGATTCCGCATCATCCGATCACAGGATCAAGATGGGTATCGTGTTGCAGAAGTTGAATGGATACATGACATCATGCCTCCAGAAGGAAGTAGAGAGAGACAGTCTTTACAGGAATTGACATATGATGCAGCTGAAACTGCTCGATCATGGATAAGAAGAGCCAAAGAAGCAGCAAGAGCTAAACAAGATCATAGAAGACTCGAGAGAATCCAGTCTGTTGAATTGACGATGCCCAGTCAGAGAGATCCAGAGCGCTTCAGTTTTTGGCTTGCTTCCTTGTCAAAGTTGAGGCCTCAAGAAAGATTAGATCTCATGGGCCTAAGAAATACCGGAGAGAGGGTTAGGCGTGGACTGAATTATCTGGGAGCAGAGGAACAACGCTGCAGAATTCAGTAA | 1440 | 0.4222 | MRNVTAHEQEGLAWDTYHHIFELVHNGNMSFRENRLEEAINFYSRANSIKPGDPVILHNRCAAYLRISRFLKDRSPSASEYKPLSGLDPTIHAELGLKDAEKLVDLRSNSVKSYLLKANALFLLEKYEKARDAILSGLQVDPFSESLQAGLRSLEKGSASLMGMNRHEEQPGTSTHGQPERTDDFDCTVCLKLLYEPVTTPCGHSFCHSCLFQSMDHGNRCPLCRTVLLISPRTCSISVTLKNIIQKNFPEEYAKRKQEHDSLTNFGVDLIPLFVMDVVMPCQKFPLNIFEPRYRLMVRRIMEGNHRMGMAIIDSTTGSLAEYACEVEITECEPLPDGRFYIEIESCRRFRIIRSQDQDGYRVAEVEWIHDIMPPEGSRERQSLQELTYDAAETARSWIRRAKEAARAKQDHRRLERIQSVELTMPSQRDPERFSFWLASLSKLRPQERLDLMGLRNTGERVRRGLNYLGAEEQRCRIQ | 479 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Prci9g1512 | 479 | ProSiteProfiles | Zinc finger RING-type profile. | 187 | 225 | IPR001841 | - | |
| Prci9g1512 | 479 | ProSiteProfiles | TPR repeat profile. | 20 | 53 | IPR019734 | GO:0005515 | |
| Prci9g1512 | 479 | Gene3D | - | 405 | 471 | - | - | |
| Prci9g1512 | 479 | SMART | lon_5 | 270 | 471 | IPR003111 | - | |
| Prci9g1512 | 479 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 174 | 266 | IPR013083 | - | |
| Prci9g1512 | 479 | SMART | tpr_5 | 20 | 53 | IPR019734 | GO:0005515 | |
| Prci9g1512 | 479 | SMART | tpr_5 | 111 | 144 | IPR019734 | GO:0005515 | |
| Prci9g1512 | 479 | SMART | ring_2 | 187 | 224 | IPR001841 | - | |
| Prci9g1512 | 479 | SUPERFAMILY | RING/U-box | 181 | 250 | - | - | |
| Prci9g1512 | 479 | SUPERFAMILY | TPR-like | 21 | 151 | IPR011990 | GO:0005515 | |
| Prci9g1512 | 479 | Pfam | Zinc finger, C3HC4 type (RING finger) | 187 | 224 | - | - | |
| Prci9g1512 | 479 | Gene3D | - | 269 | 371 | IPR046336 | - | |
| Prci9g1512 | 479 | Pfam | ATP-dependent protease La (LON) substrate-binding domain | 271 | 469 | IPR003111 | - | |
| Prci9g1512 | 479 | ProSiteProfiles | Lon N-terminal domain profile. | 268 | 471 | IPR003111 | - | |
| Prci9g1512 | 479 | SUPERFAMILY | PUA domain-like | 271 | 469 | IPR015947 | - | |
| Prci9g1512 | 479 | PANTHER | RING FINGER PROTEIN 127 | 10 | 469 | - | - | |
| Prci9g1512 | 479 | Gene3D | Tetratricopeptide repeat domain | 18 | 173 | IPR011990 | GO:0005515 | |
| Prci9g1512 | 479 | ProSitePatterns | Zinc finger RING-type signature. | 202 | 211 | IPR017907 | - | |
| Prci9g1512 | 479 | CDD | RING-HC_LONFs_rpt2 | 184 | 228 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Prci9g1512 | Prci-Chr9 | 28037881 | 28044063 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Prci9g1512 | 175 | 231 | C3H Transcription Factor Family | AT4G27470 | 37.313 | 4.88e-09 | 55.1 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Prci9g1512 | - | - | pcin:129321082 | 965.681 |