LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci9g1511	ATGAGAAACGCACATGAACAAGAAGGTTTGGCATGGGACACATACCATCATATTTTTGAACTTGTGCATAATGGCAACATGTCATTTCGGGAGAATCGGTTGGAAGAGGCAATCAACTTTTACTCAAGAGCAAATAGCATCAAACCTGGTGATCCTGTTATCCTCCACAACCGATGTGCAGCTTATCTTAGGATTAGCAGATTCTTAAAGGACAGATCTCCATCAGCTTCAGAATATAAACCATTGAGTGGGCTTGATCCTACAATACATGCTGAACTTGGTTTGAAGGATGCTGAGAAGCTTGTTGACCTACGTAGTAATTCAGTAAAATCATACCTCTTAAAGGCTAATGCGCTTTTTCTGTTAGAGAAATATGAAAAAGCCCGAGATGCAATTCTTTCAGGCCTTCAAGTCGATCCATTTAGTGAGTCCTTGCAAGCTGGACTTCGAAGTTTGGAGAAGGGATCTGCTAGTTTGATGGGCATGAATAGACATGAAGAACAGCCAGGCACGAGTACTCACGGACAACCAGAGCGCACTGATGACTTTGATTGCACTGTTTGCCTGAAGTTGTTATATGAACCTGTTACAACCCCTTGTGGACATTCTTTTTGCCATTCATGTCTATTTCAGTCAATGGATCATGGCAACAGATGCCCATTGTGCAGGACAGTTCTTTTGATCAGTCCTAGAACGTGTTCCATCAGTGTGACATTGAAGAACATCATACAAAAGAACTTTCCGGAAGAGTATGCCAAAAGGAAGCAAGAGCATGACAGTTTGACAAACTTTGGCGTGGATTTGATTCCTCTTTTTGTCATGGATGTTGTCATGCCATGTCAAAAATTTCCACTCAATATATTTGAACCTCGATATAGACTTATGGTCAGAAGAATAATGGAAGGGAACCATAGGATGGGAATGGCTATAATTGATTCTACAACAGGTTCCTTAGCTGAGTATGCTTGTGAAGTGGAAATTACAGAGTGTGAACCACTTCCAGATGGACGTTTCTATATAGAGATTGAAAGTTGCAGGAGATTCCGCATCATCCGATCACAGGATCAAGATGGGTATCGTGTTGCAGAAGTTGAATGGATACATGACATCATGCCTCCAGAAGGAAGTAGAGAGAGACAGTCTTTACAGGAATTGACATATGATGCAGCTGAAACTGCTCGATCATGGATAAGAAGAGCCAAAGAAGCAGCAAGAGCTAAACAAGATCATAGAAGACTCGAGAGAATCCAGTCTGTTGAATTGACGATGCCCAGTCAGAGAGATCCAGAGCGCTTCAGTTTTTGGCTTGCTTCCTTGTCAAAGTTGAGGCCTCAAGAAAGATTAGATCTCATGGGCCTAAGAAATACCGGAGAGAGGGTTAGGCGTGGACTGAATTATCTGGGAGCAGAGGAACAACGCTGCAGAATTCAGTAA	1434	0.4226	MRNAHEQEGLAWDTYHHIFELVHNGNMSFRENRLEEAINFYSRANSIKPGDPVILHNRCAAYLRISRFLKDRSPSASEYKPLSGLDPTIHAELGLKDAEKLVDLRSNSVKSYLLKANALFLLEKYEKARDAILSGLQVDPFSESLQAGLRSLEKGSASLMGMNRHEEQPGTSTHGQPERTDDFDCTVCLKLLYEPVTTPCGHSFCHSCLFQSMDHGNRCPLCRTVLLISPRTCSISVTLKNIIQKNFPEEYAKRKQEHDSLTNFGVDLIPLFVMDVVMPCQKFPLNIFEPRYRLMVRRIMEGNHRMGMAIIDSTTGSLAEYACEVEITECEPLPDGRFYIEIESCRRFRIIRSQDQDGYRVAEVEWIHDIMPPEGSRERQSLQELTYDAAETARSWIRRAKEAARAKQDHRRLERIQSVELTMPSQRDPERFSFWLASLSKLRPQERLDLMGLRNTGERVRRGLNYLGAEEQRCRIQ	477

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci9g1511	477	SMART	lon_5	268	469	IPR003111	-
	Prci9g1511	477	ProSiteProfiles	Lon N-terminal domain profile.	266	469	IPR003111	-
	Prci9g1511	477	SMART	tpr_5	18	51	IPR019734	GO:0005515
	Prci9g1511	477	SMART	tpr_5	109	142	IPR019734	GO:0005515
	Prci9g1511	477	SUPERFAMILY	RING/U-box	179	248	-	-
	Prci9g1511	477	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	172	264	IPR013083	-
	Prci9g1511	477	ProSiteProfiles	Zinc finger RING-type profile.	185	223	IPR001841	-
	Prci9g1511	477	CDD	RING-HC_LONFs_rpt2	182	226	-	-
	Prci9g1511	477	Gene3D	Tetratricopeptide repeat domain	16	171	IPR011990	GO:0005515
	Prci9g1511	477	Pfam	ATP-dependent protease La (LON) substrate-binding domain	269	467	IPR003111	-
	Prci9g1511	477	SMART	ring_2	185	222	IPR001841	-
	Prci9g1511	477	ProSiteProfiles	TPR repeat profile.	18	51	IPR019734	GO:0005515
	Prci9g1511	477	Gene3D	-	403	469	-	-
	Prci9g1511	477	SUPERFAMILY	PUA domain-like	269	467	IPR015947	-
	Prci9g1511	477	Gene3D	-	267	369	IPR046336	-
	Prci9g1511	477	SUPERFAMILY	TPR-like	19	149	IPR011990	GO:0005515
	Prci9g1511	477	PANTHER	RING FINGER PROTEIN 127	11	467	-	-
	Prci9g1511	477	ProSitePatterns	Zinc finger RING-type signature.	200	209	IPR017907	-
	Prci9g1511	477	Pfam	Zinc finger, C3HC4 type (RING finger)	185	222	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci9g1511	Prci-Chr9	28037881	28044063	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci9g1511	173	229	C3H Transcription Factor Family	AT4G27470	37.313	4.80e-09	55.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci9g1511	-		-	pcin:129321082	964.911