Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g1511 ATGAGAAACGCACATGAACAAGAAGGTTTGGCATGGGACACATACCATCATATTTTTGAACTTGTGCATAATGGCAACATGTCATTTCGGGAGAATCGGTTGGAAGAGGCAATCAACTTTTACTCAAGAGCAAATAGCATCAAACCTGGTGATCCTGTTATCCTCCACAACCGATGTGCAGCTTATCTTAGGATTAGCAGATTCTTAAAGGACAGATCTCCATCAGCTTCAGAATATAAACCATTGAGTGGGCTTGATCCTACAATACATGCTGAACTTGGTTTGAAGGATGCTGAGAAGCTTGTTGACCTACGTAGTAATTCAGTAAAATCATACCTCTTAAAGGCTAATGCGCTTTTTCTGTTAGAGAAATATGAAAAAGCCCGAGATGCAATTCTTTCAGGCCTTCAAGTCGATCCATTTAGTGAGTCCTTGCAAGCTGGACTTCGAAGTTTGGAGAAGGGATCTGCTAGTTTGATGGGCATGAATAGACATGAAGAACAGCCAGGCACGAGTACTCACGGACAACCAGAGCGCACTGATGACTTTGATTGCACTGTTTGCCTGAAGTTGTTATATGAACCTGTTACAACCCCTTGTGGACATTCTTTTTGCCATTCATGTCTATTTCAGTCAATGGATCATGGCAACAGATGCCCATTGTGCAGGACAGTTCTTTTGATCAGTCCTAGAACGTGTTCCATCAGTGTGACATTGAAGAACATCATACAAAAGAACTTTCCGGAAGAGTATGCCAAAAGGAAGCAAGAGCATGACAGTTTGACAAACTTTGGCGTGGATTTGATTCCTCTTTTTGTCATGGATGTTGTCATGCCATGTCAAAAATTTCCACTCAATATATTTGAACCTCGATATAGACTTATGGTCAGAAGAATAATGGAAGGGAACCATAGGATGGGAATGGCTATAATTGATTCTACAACAGGTTCCTTAGCTGAGTATGCTTGTGAAGTGGAAATTACAGAGTGTGAACCACTTCCAGATGGACGTTTCTATATAGAGATTGAAAGTTGCAGGAGATTCCGCATCATCCGATCACAGGATCAAGATGGGTATCGTGTTGCAGAAGTTGAATGGATACATGACATCATGCCTCCAGAAGGAAGTAGAGAGAGACAGTCTTTACAGGAATTGACATATGATGCAGCTGAAACTGCTCGATCATGGATAAGAAGAGCCAAAGAAGCAGCAAGAGCTAAACAAGATCATAGAAGACTCGAGAGAATCCAGTCTGTTGAATTGACGATGCCCAGTCAGAGAGATCCAGAGCGCTTCAGTTTTTGGCTTGCTTCCTTGTCAAAGTTGAGGCCTCAAGAAAGATTAGATCTCATGGGCCTAAGAAATACCGGAGAGAGGGTTAGGCGTGGACTGAATTATCTGGGAGCAGAGGAACAACGCTGCAGAATTCAGTAA 1434 0.4226 MRNAHEQEGLAWDTYHHIFELVHNGNMSFRENRLEEAINFYSRANSIKPGDPVILHNRCAAYLRISRFLKDRSPSASEYKPLSGLDPTIHAELGLKDAEKLVDLRSNSVKSYLLKANALFLLEKYEKARDAILSGLQVDPFSESLQAGLRSLEKGSASLMGMNRHEEQPGTSTHGQPERTDDFDCTVCLKLLYEPVTTPCGHSFCHSCLFQSMDHGNRCPLCRTVLLISPRTCSISVTLKNIIQKNFPEEYAKRKQEHDSLTNFGVDLIPLFVMDVVMPCQKFPLNIFEPRYRLMVRRIMEGNHRMGMAIIDSTTGSLAEYACEVEITECEPLPDGRFYIEIESCRRFRIIRSQDQDGYRVAEVEWIHDIMPPEGSRERQSLQELTYDAAETARSWIRRAKEAARAKQDHRRLERIQSVELTMPSQRDPERFSFWLASLSKLRPQERLDLMGLRNTGERVRRGLNYLGAEEQRCRIQ 477
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Prci9g1511 477 SMART lon_5 268 469 IPR003111 -
Prci9g1511 477 ProSiteProfiles Lon N-terminal domain profile. 266 469 IPR003111 -
Prci9g1511 477 SMART tpr_5 18 51 IPR019734 GO:0005515
Prci9g1511 477 SMART tpr_5 109 142 IPR019734 GO:0005515
Prci9g1511 477 SUPERFAMILY RING/U-box 179 248 - -
Prci9g1511 477 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 172 264 IPR013083 -
Prci9g1511 477 ProSiteProfiles Zinc finger RING-type profile. 185 223 IPR001841 -
Prci9g1511 477 CDD RING-HC_LONFs_rpt2 182 226 - -
Prci9g1511 477 Gene3D Tetratricopeptide repeat domain 16 171 IPR011990 GO:0005515
Prci9g1511 477 Pfam ATP-dependent protease La (LON) substrate-binding domain 269 467 IPR003111 -
Prci9g1511 477 SMART ring_2 185 222 IPR001841 -
Prci9g1511 477 ProSiteProfiles TPR repeat profile. 18 51 IPR019734 GO:0005515
Prci9g1511 477 Gene3D - 403 469 - -
Prci9g1511 477 SUPERFAMILY PUA domain-like 269 467 IPR015947 -
Prci9g1511 477 Gene3D - 267 369 IPR046336 -
Prci9g1511 477 SUPERFAMILY TPR-like 19 149 IPR011990 GO:0005515
Prci9g1511 477 PANTHER RING FINGER PROTEIN 127 11 467 - -
Prci9g1511 477 ProSitePatterns Zinc finger RING-type signature. 200 209 IPR017907 -
Prci9g1511 477 Pfam Zinc finger, C3HC4 type (RING finger) 185 222 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Prci9g1511 Prci-Chr9 28037881 28044063 Dispersed/Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g1511 173 229 C3H Transcription Factor Family AT4G27470 37.313 4.80e-09 55.1
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g1511 - - pcin:129321082 964.911