Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g1510 ATGACGTCGAGAACTACGTTTGGTATCTGGATTTTGCCTGGATTGCAGGCACATGAACAAGAAGGTTTGGCATGGGACACATACCATCATATTTTTGAACTTGTGCATAATGGCAACATGTCATTTCGGGAGAATCGGTTGGAAGAGGCAATCAACTTTTACTCAAGAGCAAATAGCATCAAACCTGGTGATCCTGTTATCCTCCACAACCGATGTGCAGCTTATCTTAGGATTAGCAGATTCTTAAAGGACAGATCTCCATCAGCTTCAGAATATAAACCATTGAGTGGGCTTGATCCTACAATACATGCTGAACTTGGTTTGAAGGATGCTGAGAAGCTTGTTGACCTACGTAGTAATTCAGTAAAATCATACCTCTTAAAGGCTAATGCGCTTTTTCTGTTAGAGAAATATGAAAAAGCCCGAGATGCAATTCTTTCAGGCCTTCAAGTCGATCCATTTAGTGAGTCCTTGCAAGCTGGACTTCGAAGTTTGGAGAAGGGATCTGCTAGTTTGATGGGCATGAATAGACATGAAGAACAGCCAGGCACGAGTACTCACGGACAACCAGAGCGCACTGATGACTTTGATTGCACTGTTTGCCTGAAGTTGTTATATGAACCTGTTACAACCCCTTGTGGACATTCTTTTTGCCATTCATGTCTATTTCAGTCAATGGATCATGGCAACAGATGCCCATTGTGCAGGACAGTTCTTTTGATCAGTCCTAGAACGTGTTCCATCAGTGTGACATTGAAGAACATCATACAAAAGAACTTTCCGGAAGAGTATGCCAAAAGGAAGCAAGAGCATGACAGTTTGACAAACTTTGGCGTGGATTTGATTCCTCTTTTTGTCATGGATGTTGTCATGCCATGTCAAAAATTTCCACTCAATATATTTGAACCTCGATATAGACTTATGGTCAGAAGAATAATGGAAGGGAACCATAGGATGGGAATGGCTATAATTGATTCTACAACAGGTTCCTTAGCTGAGTATGCTTGTGAAGTGGAAATTACAGAGTGTGAACCACTTCCAGATGGACGTTTCTATATAGAGATTGAAAGTTGCAGGAGATTCCGCATCATCCGATCACAGGATCAAGATGGGTATCGTGTTGCAGAAGTTGAATGGATACATGACATCATGCCTCCAGAAGGAAGTAGAGAGAGACAGTCTTTACAGGAATTGACATATGATGCAGCTGAAACTGCTCGATCATGGATAAGAAGAGCCAAAGAAGCAGCAAGAGCTAAACAAGATCATAGAAGACTCGAGAGAATCCAGTCTGTTGAATTGACGATGCCCAGTCAGAGAGATCCAGAGCGCTTCAGTTTTTGGCTTGCTTCCTTGTCAAAGTTGAGGCCTCAAGAAAGATTAGATCTCATGGGCCTAAGAAATACCGGAGAGAGGGTTAGGCGTGGACTGAATTATCTGGGAGCAGAGGAACAACGCTGCAGAATTCAGTAA 1473 0.4243 MTSRTTFGIWILPGLQAHEQEGLAWDTYHHIFELVHNGNMSFRENRLEEAINFYSRANSIKPGDPVILHNRCAAYLRISRFLKDRSPSASEYKPLSGLDPTIHAELGLKDAEKLVDLRSNSVKSYLLKANALFLLEKYEKARDAILSGLQVDPFSESLQAGLRSLEKGSASLMGMNRHEEQPGTSTHGQPERTDDFDCTVCLKLLYEPVTTPCGHSFCHSCLFQSMDHGNRCPLCRTVLLISPRTCSISVTLKNIIQKNFPEEYAKRKQEHDSLTNFGVDLIPLFVMDVVMPCQKFPLNIFEPRYRLMVRRIMEGNHRMGMAIIDSTTGSLAEYACEVEITECEPLPDGRFYIEIESCRRFRIIRSQDQDGYRVAEVEWIHDIMPPEGSRERQSLQELTYDAAETARSWIRRAKEAARAKQDHRRLERIQSVELTMPSQRDPERFSFWLASLSKLRPQERLDLMGLRNTGERVRRGLNYLGAEEQRCRIQ 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g1510 490 SUPERFAMILY PUA domain-like 282 480 IPR015947 -
Prci9g1510 490 SMART tpr_5 31 64 IPR019734 GO:0005515
Prci9g1510 490 SMART tpr_5 122 155 IPR019734 GO:0005515
Prci9g1510 490 ProSiteProfiles Lon N-terminal domain profile. 279 482 IPR003111 -
Prci9g1510 490 SMART lon_5 281 482 IPR003111 -
Prci9g1510 490 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 277 IPR013083 -
Prci9g1510 490 SUPERFAMILY RING/U-box 192 261 - -
Prci9g1510 490 Pfam ATP-dependent protease La (LON) substrate-binding domain 282 480 IPR003111 -
Prci9g1510 490 Gene3D Tetratricopeptide repeat domain 29 184 IPR011990 GO:0005515
Prci9g1510 490 ProSiteProfiles TPR repeat profile. 31 64 IPR019734 GO:0005515
Prci9g1510 490 Pfam Zinc finger, C3HC4 type (RING finger) 198 235 - -
Prci9g1510 490 PANTHER RING FINGER PROTEIN 127 24 480 - -
Prci9g1510 490 CDD RING-HC_LONFs_rpt2 195 239 - -
Prci9g1510 490 SUPERFAMILY TPR-like 32 162 IPR011990 GO:0005515
Prci9g1510 490 ProSitePatterns Zinc finger RING-type signature. 213 222 IPR017907 -
Prci9g1510 490 Gene3D - 416 482 - -
Prci9g1510 490 Gene3D - 280 382 IPR046336 -
Prci9g1510 490 ProSiteProfiles Zinc finger RING-type profile. 198 236 IPR001841 -
Prci9g1510 490 SMART ring_2 198 235 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g1510 Prci-Chr9 28037881 28044948 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g1510 186 242 C3H Transcription Factor Family AT4G27470 37.313 4.60e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g1510 - - pcin:129321082 964.911