Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g1509 ATGACGTCGAGAACTACGTTTGGGCACATGAACAAGAAGGTTTGGCATGGGACACATACCATCATATTTTTGAACTTGTGCATAATGGCAACATGTCATTTCGGGAGAATCGGTTGGAAGAGGATTAGCAGATTCTTAAAGGACAGATCTCCATCAGCTTCAGAATATAAACCATTGAGTGGGCTTGATCCTACAATACATGCTGAACTTGGTTTGAAGGATGCTGAGAAGCTTGTTGACCTACGTAGTAATTCAGTAAAATCATACCTCTTAAAGGCTAATGCGCTTTTTCTGTTAGAGAAATATGAAAAAGCCCGAGATGCAATTCTTTCAGGCCTTCAAGTCGATCCATTTAGTGAGTCCTTGCAAGCTGGACTTCGAAGTTTGGAGAAGGGATCTGCTAGTTTGATGGGCATGAATAGACATGAAGAACAGCCAGGCACGAGTACTCACGGACAACCAGAGCGCACTGATGACTTTGATTGCACTGTTTGCCTGAAGTTGTTATATGAACCTGTTACAACCCCTTGTGGACATTCTTTTTGCCATTCATGTCTATTTCAGTCAATGGATCATGGCAACAGATGCCCATTGTGCAGGACAGTTCTTTTGATCAGTCCTAGAACGTGTTCCATCAGTGTGACATTGAAGAACATCATACAAAAGAACTTTCCGGAAGAGTATGCCAAAAGGAAGCAAGAGCATGACAGTTTGACAAACTTTGGCGTGGATTTGATTCCTCTTTTTGTCATGGATGTTGTCATGCCATGTCAAAAATTTCCACTCAATATATTTGAACCTCGATATAGACTTATGGTCAGAAGAATAATGGAAGGGAACCATAGGATGGGAATGGCTATAATTGATTCTACAACAGGTTCCTTAGCTGAGTATGCTTGTGAAGTGGAAATTACAGAGTGTGAACCACTTCCAGATGGACGTTTCTATATAGAGATTGAAAGTTGCAGGAGATTCCGCATCATCCGATCACAGGATCAAGATGGGTATCGTGTTGCAGAAGTTGAATGGATACATGACATCATGCCTCCAGAAGGAAGTAGAGAGAGACAGTCTTTACAGGAATTGACATATGATGCAGCTGAAACTGCTCGATCATGGATAAGAAGAGCCAAAGAAGCAGCAAGAGCTAAACAAGATCATAGAAGACTCGAGAGAATCCAGTCTGTTGAATTGACGATGCCCAGTCAGAGAGATCCAGAGCGCTTCAGTTTTTGGCTTGCTTCCTTGTCAAAGTTGAGGCCTCAAGAAAGATTAGATCTCATGGGCCTAAGAAATACCGGAGAGAGGGTTAGGCGTGGACTGAATTATCTGGGAGCAGAGGAACAACGCTGCAGAATTCAGTAA 1365 0.4242 MTSRTTFGHMNKKVWHGTHTIIFLNLCIMATCHFGRIGWKRISRFLKDRSPSASEYKPLSGLDPTIHAELGLKDAEKLVDLRSNSVKSYLLKANALFLLEKYEKARDAILSGLQVDPFSESLQAGLRSLEKGSASLMGMNRHEEQPGTSTHGQPERTDDFDCTVCLKLLYEPVTTPCGHSFCHSCLFQSMDHGNRCPLCRTVLLISPRTCSISVTLKNIIQKNFPEEYAKRKQEHDSLTNFGVDLIPLFVMDVVMPCQKFPLNIFEPRYRLMVRRIMEGNHRMGMAIIDSTTGSLAEYACEVEITECEPLPDGRFYIEIESCRRFRIIRSQDQDGYRVAEVEWIHDIMPPEGSRERQSLQELTYDAAETARSWIRRAKEAARAKQDHRRLERIQSVELTMPSQRDPERFSFWLASLSKLRPQERLDLMGLRNTGERVRRGLNYLGAEEQRCRIQ 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g1509 454 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 241 IPR013083 -
Prci9g1509 454 ProSiteProfiles Zinc finger RING-type profile. 162 200 IPR001841 -
Prci9g1509 454 SMART lon_5 245 446 IPR003111 -
Prci9g1509 454 Pfam ATP-dependent protease La (LON) substrate-binding domain 246 444 IPR003111 -
Prci9g1509 454 Gene3D - 244 346 IPR046336 -
Prci9g1509 454 SUPERFAMILY PUA domain-like 246 444 IPR015947 -
Prci9g1509 454 ProSiteProfiles Lon N-terminal domain profile. 243 446 IPR003111 -
Prci9g1509 454 SUPERFAMILY TPR-like 68 130 IPR011990 GO:0005515
Prci9g1509 454 ProSitePatterns Zinc finger RING-type signature. 177 186 IPR017907 -
Prci9g1509 454 PANTHER RING FINGER PROTEIN 127 67 444 - -
Prci9g1509 454 SUPERFAMILY RING/U-box 156 225 - -
Prci9g1509 454 CDD RING-HC_LONFs_rpt2 159 203 - -
Prci9g1509 454 Gene3D Tetratricopeptide repeat domain 67 145 IPR011990 GO:0005515
Prci9g1509 454 Gene3D - 380 446 - -
Prci9g1509 454 SMART ring_2 162 199 IPR001841 -
Prci9g1509 454 Pfam Zinc finger, C3HC4 type (RING finger) 162 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g1509 Prci-Chr9 28037881 28044948 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g1509 150 206 C3H Transcription Factor Family AT4G27470 37.313 5.68e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g1509 - - pcin:129321082 838.18