Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g1508 ATGAAACGAAGGACGCAGAAGCGACCACGATACTCCTCCTATTTCCTCCTCTATGCCAAACGCTTCAATTTCTCAATCTTGCTTCTGAAAAGCATCGGACTACAGACTCTGCTACTTTCTGCTACCTATCATCCTATGGTGGGAGAATCGCCTTCTTCTTCAGCTGTGCTTGCTATGGACGGTCTTGATGACGTCGAGAACTACGTTTGGGCACATGAACAAGAAGGTTTGGCATGGGACACATACCATCATATTTTTGAACTTGTGCATAATGGCAACATGTCATTTCGGGAGAATCGGTTGGAAGAGGCAATCAACTTTTACTCAAGAGCAAATAGCATCAAACCTGGTGATCCTGTTATCCTCCACAACCGATGTGCAGCTTATCTTAGGATTAGCAGATTCTTAAAGGACAGATCTCCATCAGCTTCAGAATATAAACCATTGAGTGGGCTTGATCCTACAATACATGCTGAACTTGGTTTGAAGGATGCTGAGAAGCTTGTTGACCTACGTAGTAATTCAGTAAAATCATACCTCTTAAAGGCTAATGCGCTTTTTCTGTTAGAGAAATATGAAAAAGCCCGAGATGCAATTCTTTCAGGCCTTCAAGTCGATCCATTTAGTGAGTCCTTGCAAGCTGGACTTCGAAGTTTGGAGAAGGGATCTGCTAGTTTGATGGGCATGAATAGACATGAAGAACAGCCAGGCACGAGTACTCACGGACAACCAGAGCGCACTGATGACTTTGATTGCACTGTTTGCCTGAAGTTGTTATATGAACCTGTTACAACCCCTTGTGGACATTCTTTTTGCCATTCATGTCTATTTCAGTCAATGGATCATGGCAACAGATGCCCATTGTGCAGGACAGTTCTTTTGATCAGTCCTAGAACGTGTTCCATCAGTGTGACATTGAAGAACATCATACAAAAGAACTTTCCGGAAGAGTATGCCAAAAGGAAGCAAGAGCATGACAGTTTGACAAACTTTGGCGTGGATTTGATTCCTCTTTTTGTCATGGATGTTGTCATGCCATGTCAAAAATTTCCACTCAATATATTTGAACCTCGATATAGACTTATGGTCAGAAGAATAATGGAAGGGAACCATAGGATGGGAATGGCTATAATTGATTCTACAACAGGTTCCTTAGCTGAGTATGCTTGTGAAGTGGAAATTACAGAGTGTGAACCACTTCCAGATGGACGTTTCTATATAGAGATTGAAAGTTGCAGGAGATTCCGCATCATCCGATCACAGGATCAAGATGGGTATCGTGTTGCAGAAGTTGAATGGATACATGACATCATGCCTCCAGAAGGAAGTAGAGAGAGACAGTCTTTACAGGAATTGACATATGATGCAGCTGAAACTGCTCGATCATGGATAAGAAGAGCCAAAGAAGCAGCAAGAGCTAAACAAGATCATAGAAGACTCGAGAGAATCCAGTCTGTTGAATTGACGATGCCCAGTCAGAGAGATCCAGAGCGCTTCAGTTTTTGGCTTGCTTCCTTGTCAAAGTTGAGGCCTCAAGAAAGATTAGATCTCATGGGCCTAAGAAATACCGGAGAGAGGGTTAGGCGTGGACTGAATTATCTGGGAGCAGAGGAACAACGCTGCAGAATTCAGTAA 1635 0.4294 MKRRTQKRPRYSSYFLLYAKRFNFSILLLKSIGLQTLLLSATYHPMVGESPSSSAVLAMDGLDDVENYVWAHEQEGLAWDTYHHIFELVHNGNMSFRENRLEEAINFYSRANSIKPGDPVILHNRCAAYLRISRFLKDRSPSASEYKPLSGLDPTIHAELGLKDAEKLVDLRSNSVKSYLLKANALFLLEKYEKARDAILSGLQVDPFSESLQAGLRSLEKGSASLMGMNRHEEQPGTSTHGQPERTDDFDCTVCLKLLYEPVTTPCGHSFCHSCLFQSMDHGNRCPLCRTVLLISPRTCSISVTLKNIIQKNFPEEYAKRKQEHDSLTNFGVDLIPLFVMDVVMPCQKFPLNIFEPRYRLMVRRIMEGNHRMGMAIIDSTTGSLAEYACEVEITECEPLPDGRFYIEIESCRRFRIIRSQDQDGYRVAEVEWIHDIMPPEGSRERQSLQELTYDAAETARSWIRRAKEAARAKQDHRRLERIQSVELTMPSQRDPERFSFWLASLSKLRPQERLDLMGLRNTGERVRRGLNYLGAEEQRCRIQ 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g1508 544 Pfam ATP-dependent protease La (LON) substrate-binding domain 336 534 IPR003111 -
Prci9g1508 544 SMART ring_2 252 289 IPR001841 -
Prci9g1508 544 ProSiteProfiles Lon N-terminal domain profile. 333 536 IPR003111 -
Prci9g1508 544 Gene3D Tetratricopeptide repeat domain 83 238 IPR011990 GO:0005515
Prci9g1508 544 PANTHER RING FINGER PROTEIN 127 75 534 - -
Prci9g1508 544 CDD RING-HC_LONFs_rpt2 249 293 - -
Prci9g1508 544 Gene3D - 470 536 - -
Prci9g1508 544 ProSitePatterns Zinc finger RING-type signature. 267 276 IPR017907 -
Prci9g1508 544 ProSiteProfiles TPR repeat profile. 85 118 IPR019734 GO:0005515
Prci9g1508 544 SMART lon_5 335 536 IPR003111 -
Prci9g1508 544 SUPERFAMILY PUA domain-like 336 534 IPR015947 -
Prci9g1508 544 SUPERFAMILY RING/U-box 246 315 - -
Prci9g1508 544 Pfam Zinc finger, C3HC4 type (RING finger) 252 289 - -
Prci9g1508 544 Gene3D - 334 436 IPR046336 -
Prci9g1508 544 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 239 331 IPR013083 -
Prci9g1508 544 SMART tpr_5 85 118 IPR019734 GO:0005515
Prci9g1508 544 SMART tpr_5 176 209 IPR019734 GO:0005515
Prci9g1508 544 SUPERFAMILY TPR-like 86 216 IPR011990 GO:0005515
Prci9g1508 544 ProSiteProfiles Zinc finger RING-type profile. 252 290 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g1508 Prci-Chr9 28037881 28045591 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g1508 240 296 C3H Transcription Factor Family AT4G27470 37.313 4.07e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g1508 - - pcin:129321082 1102.04