Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g1506 ATGAAACGAAGGACGCAGAAGCGACCACGATACTCCTCCTATTTCCTCCTCTATGCCAAACGCTTCAATTTCTCAATCTTGCTTCTGAAAAGCATCGGACTACAGACTCTGCTACTTTCTGCTACCTATCATCCTATGGTGGGAGAATCGCCTTCTTCTTCAGCTGTGCTTGCTATGGACGGTCTTGATGACGTCGAGAACTACGTTTGGGCACATGAACAAGAAGGTTTGGCATGGGACACATACCATCATATTTTTGAACTTGTGCATAATGGCAACATGTCATTTCGGGAGAATCGGTTGGAAGAGGCAATCAACTTTTACTCAAGAGCAAATAGCATCAAACCTGGTGATCCTGTTATCCTCCACAACCGATGTGCAGCTTATCTTAGGATTAGCAGATTCTTAAAGGACAGATCTCCATCAGCTTCAGAATATAAACCATTGAGTGGGCTTGATCCTACAATACATGCTGAACTTGGTTTGAAGGATGCTGAGAAGCTTGTTGACCTACGTAGTAATTCAGTAAAATCATACCTCTTAAAGGCTAATGCGCTTTTTCTGTTAGAGAAATATGAAAAAGCCCGAGATGCAATTCTTTCAGGCCTTCAAGTCGATCCATTTAGTGAGTCCTTGCAAGCTGGACTTCGAAGTTTGGAGAAGGGATCTGCTAGTTTGATGGGCATGAATAGACATGAAGAACAGCCAGGCACGAGTACTCACGGACAACCAGAGCGCACTGATGACTTTGATTGCACTGTTTGCCTGAAGTTGTTATATGAACCTGTTACAACCCCTTGTGGACATTCTTTTTGCCATTCATGTCTATTTCAGTCAATGGATCATGGCAACAGATGCCCATTGTGCAGGACAGTTCTTTTGATCAGTCCTAGAACGTGTTCCATCAGTGTGACATTGAAGAACATCATACAAAAGAACTTTCCGGAAGAGTATGCCAAAAGGAAGCAAGAGCATGACAGTTTGACAAACTTTGGCGTGGATTTGATTCCTCTTTTTGTCATGGATGTTGTCATGCCATGTCAAAAATTTCCACTCAATATATTTGAACCTCGATATAGACTTATGGCTATAATTGATTCTACAACAGGTTCCTTAGCTGAGTATGCTTGTGAAGTGGAAATTACAGAGTGTGAACCACTTCCAGATGGACGTTTCTATATAGAGATTGAAAGTTGCAGGAGATTCCGCATCATCCGATCACAGGATCAAGATGGGTATCGTGTTGCAGAAGTTGAATGGATACATGACATCATGCCTCCAGAAGGAAGTAGAGAGAGACAGTCTTTACAGGAATTGACATATGATGCAGCTGAAACTGCTCGATCATGGATAAGAAGAGCCAAAGAAGCAGCAAGAGCTAAACAAGATCATAGAAGACTCGAGAGAATCCAGTCTGTTGAATTGACGATGCCCAGTCAGAGAGATCCAGAGCGCTTCAGTTTTTGGCTTGCTTCCTTGTCAAAGTTGAGGCCTCAAGAAAGATTAGATCTCATGGGCCTAAGAAATACCGGAGAGAGGGTTAGGCGTGGACTGAATTATCTGGGAGCAGAGGAACAACGCTGCAGAATTCAGTAA 1596 0.4292 MKRRTQKRPRYSSYFLLYAKRFNFSILLLKSIGLQTLLLSATYHPMVGESPSSSAVLAMDGLDDVENYVWAHEQEGLAWDTYHHIFELVHNGNMSFRENRLEEAINFYSRANSIKPGDPVILHNRCAAYLRISRFLKDRSPSASEYKPLSGLDPTIHAELGLKDAEKLVDLRSNSVKSYLLKANALFLLEKYEKARDAILSGLQVDPFSESLQAGLRSLEKGSASLMGMNRHEEQPGTSTHGQPERTDDFDCTVCLKLLYEPVTTPCGHSFCHSCLFQSMDHGNRCPLCRTVLLISPRTCSISVTLKNIIQKNFPEEYAKRKQEHDSLTNFGVDLIPLFVMDVVMPCQKFPLNIFEPRYRLMAIIDSTTGSLAEYACEVEITECEPLPDGRFYIEIESCRRFRIIRSQDQDGYRVAEVEWIHDIMPPEGSRERQSLQELTYDAAETARSWIRRAKEAARAKQDHRRLERIQSVELTMPSQRDPERFSFWLASLSKLRPQERLDLMGLRNTGERVRRGLNYLGAEEQRCRIQ 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g1506 531 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 239 331 IPR013083 -
Prci9g1506 531 SUPERFAMILY RING/U-box 246 315 - -
Prci9g1506 531 SMART ring_2 252 289 IPR001841 -
Prci9g1506 531 Gene3D Tetratricopeptide repeat domain 83 238 IPR011990 GO:0005515
Prci9g1506 531 Pfam Zinc finger, C3HC4 type (RING finger) 252 289 - -
Prci9g1506 531 Gene3D - 334 364 IPR046336 -
Prci9g1506 531 Gene3D - 365 423 IPR046336 -
Prci9g1506 531 Pfam ATP-dependent protease La (LON) substrate-binding domain 368 521 IPR003111 -
Prci9g1506 531 CDD RING-HC_LONFs_rpt2 249 293 - -
Prci9g1506 531 SMART lon_5 335 523 IPR003111 -
Prci9g1506 531 ProSitePatterns Zinc finger RING-type signature. 267 276 IPR017907 -
Prci9g1506 531 ProSiteProfiles TPR repeat profile. 85 118 IPR019734 GO:0005515
Prci9g1506 531 SUPERFAMILY TPR-like 86 216 IPR011990 GO:0005515
Prci9g1506 531 SUPERFAMILY PUA domain-like 336 521 IPR015947 -
Prci9g1506 531 PANTHER RING FINGER PROTEIN 127 75 521 - -
Prci9g1506 531 SMART tpr_5 85 118 IPR019734 GO:0005515
Prci9g1506 531 SMART tpr_5 176 209 IPR019734 GO:0005515
Prci9g1506 531 ProSiteProfiles Zinc finger RING-type profile. 252 290 IPR001841 -
Prci9g1506 531 Gene3D - 457 523 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g1506 Prci-Chr9 28037881 28045592 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g1506 240 296 C3H Transcription Factor Family AT4G27470 37.313 4.08e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g1506 - - pcin:129321082 1066.22