Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g1487 ATGGTTCTCACGGAAGAACAGAAAAAACGAGCCGAAGCAAACCGGTTGGCGGCAATTGAAAGACGGAAGGCAGTTTTAGAAGCTCGTGGACAGAAAGACCCTTGGCAGCTCTTCAAGTGCCGTAAGATCTCTTCCGAACCAATTGCGAAGCCCACACCTTCCGTTCAACCTCAGTCCGTCTCCGTGGAACCTGTTTCTCCCGCATCTCTGCCCCATAAGTTTTTGGTTAGGCTCGAAATATGCTCACCCGATTCCTTTTCTGCAACTCCTCTTCCCCTCCGGGGTTCCCCCTATCCCGGAGAAGAATGGTGCTTGCGGAGACTAAGTGGTCACTTGACCAATGTCATGCCTTCACACTACACCCAGAATAATGATGGCAGAAACGCCTGTGTGTATAACTTGAGGGATTACCATGCTGTCCTTAAGTGTTTGAAGGCTGTCATGGACATAGAAGTTGAAGAAATTCCGCAGGGAACTTTGAAAGCCGTTGAAGCGTTTTCACATTTCTTTGCTACGGAGCGCTGGACGCCCTGCAGGCCCGAGCATTTGCCTGATGACAAGGTTGATGAGTTAATTGGGACGCTACCAAGGGCTCTGTTGGATGCACTGTTGCCTTTCCAAAGGGATGGTTTAAGATTTGGATTGAGACGGGGTGGCCGGTGTCTTATTGCTGATGAGATGGGCCTTGGGAAAACGCTCCAGGCTATTGCTATTGCAGGATGCTTCTTGAATGAAGGTTCTATACTTGTTGTTTGTCCAGCTGTTTTGCGATTTACATGGGCAGAAGAATTAGAGCGGTGGCTTCCCTGTTGTTTGCCTGCTGATATCCATCTGGTCTTTGGCCATCGAGATAATCCTGCTTATTTAAGAAGATGCCCTAGAATTGTGGTTATTTCTTATACCATGCTCCATCGTTTGAGGAAAAGCATGCTTGGGCAAGAATGGGCCCTCTTGATTGTTGATGAATCTCATCATGTGCGATGTACGAGGAAGACCTCAGAACCAGGGGAGATAAAGGCTGTTCTTGATGTAGCTTCAACTGTCAAGCGCATAATACTGCTATCTGGGACACCTTCTTTGTCAAGGCCATATGACATATTTCATCAGATAAACATGTTATGGCCTGGACTGCTGGGCAAGGATAAATATGCATTTGCTAAAACTTATTGCGATTGTAAATATATCAAGGGAATCCATGGCAAAATTTTTGCGGATTTTTCAAAGGGCATTCGCTTGGAAGAGTTGAATGTGTTACTCAAGCAAACTGTTATGATAAGGCGTCTAAAGGAACATGTGCTGCTACAATTACCACCAAAACGGCGGCAAATTATACGGTTGCTGTTGAAGAGATCAGATGTAGTTGCTGCAAAAAAGGCAGTTGGAAAGTTGAATGGCAGTACTTCCAAAAGTGATACTGACGACATGACCTTGGACAGTTTTGATGAACCTGATGGGATGTTGAAGAGATCAGATGTAGTTGCTGCAGAAACAGCAGTTGGGGTGTCAGATACTGATATTGATACTTCTGAAAGTGTTAATGAAGACATAACTTTGGAAACTTTGGATGAATCTGAAGGGAAGCTTTCCTACCAGGAACTTGGAATTGCAAAGCTTTCTGGATTTCGTGAATGGCTTTCCCTCCATCCAGTCACTGCAGAGTCAGAAAGTGCTTCAAAAATGATAATTTTTGCTCATCACCACAAAGTTCTTGATGGAGTGCAGGAGTTAGTATGTGAGAAAGGAATTAGTTTTGTCCGAATTGATGGAAACACACTTGCTAGGGATAGGCAGTCAGCGGTGGTGTCATTTCGTTCAAGACTGGAGGTTAAAATTGCAATAGTAGGTATTTTAGCAGCAGGATTTGGAGTTGATTTCTCAGCAGCACAAGATGTCGTGTTCTTGGAGCTTCCACAATGCCCAACTCTGATGCTTCAGTTGCACTGGGCACAGTGGATGCGTCAGGTGACTGCATTTGAAAGGAGACACAGAAACGGGAACATGGCTGAGGATAGAGCTCATCGCCGAGGGCAAACAAATGCTGTCAATGTATATATATTTTGCGCAAAGGATACCTGGGATGAGTCACATTGGAAAAATTTGAACAGAAGTTTGCACCGAGTTTCATCGACAACAGATGGTAAATATGATGCAATGAAAGAGATACAGGTTGAAGGTGTTACTTACCTGGACACACTTGTCAAAACCAATAGAAGTTATGAAGAGCAATCTGCATCTGATGAAACTTATGAACAGGTGACCACACTGCTGGATTTTGCCTCAGTTTCAAATTTGCAACCTTCCCAAGCAAACTTTAAGGAATCAGAGGCAAGATTGGGTGATCAAGCTGATCAGCAGACTTGCTTTGTAAATAATTTAGCTGACAAGGTTTCCAGCCCAGAATCAGGCGGGGCTTCTATTTTGGATGTAAATCTGGGTGTAGATCTTTTTGACACCAAGGGAAGATGCTCTGGTATTGACATGAGTAAGATGGACAAGAGTGGACGAAGCAACAAACAGATGGTAGAATTTATTCAGAAGAACAGTGGTGAAGATGATAATCAAGTAGACGAGAATAAACAATTATCAACAATAAAAGCAGATGACTACCATCCTGTTCAGCCAATTGAAGCTGAAGAAAATTCCTCTTGTGCTGAATCTCTACGATTTGAGGTGAGCCCGTACACTGGAAGGATCCACTTGTATACTTGCATTTTGGGTACAGACACAAGACCAAGACCGCTTTTTAAGAATTTCCGACCAGAGGAACTTGAGTTGCTCAGTTCCTTTTCTGATGATGATAAAAAGAAAAAGGAGATCTCTGTCAGGGGTAGTCCTGCTTTTACAAATGCTCTTTTGGAATTTTCAAATGAATGGAAGAAATTGAGGCCAATTGAGCAAAAGAAGTTACTGGGAAAGCCATTACAACTTCCTTTGGCTGTTGAACTGTGCTACTTGAGCGAAACTAGTAGCCACAACAAGAAGGGATTATTAAATGGTGGAAGTAAACGGCGTATGACACCTTTAATGGAAATAAGCCATCCTTTGCCATCAGATGCTGTTTGGAGAAAGATCTATCTGCGAAGTGGCAATGGTAAGAAGGAGAAAGAATACACTCAAGCTTGGACTCTGACAGATGAGCCACTCTGTAAGCTTTGTCAAAAGACGTGCATGGGTAACAATGCGAAGACACCTGAATATTTTGAAGATCTTTTCTGTAACCTTGTCTGCTATGAAGAATATCGTATGAGAACAAGCAATAAATTCCTTCGGCAGGAACTTTTTGAAGTTGAGCATGGTGTGTGCTCAAATTGCCATTTAGACTGTCATAAACTAGTTGAACATATAAGACCTTTGCCAGGAGCAAGACGTAGAGAGTACATTGAGAAAGTGGCACCAAATGTGGCTGGGCGAAAGAACATGCTTGAGAAGCTTGTCAAGGATCCAACTGAGGGCAATGCGTGGCATGCTGATCATATTGTTCCAGTATATCAAGGTGGAGGTGAATGTCGGCTAGAGAATATGAGGACTCTTTGTGTGGCCTGCCACTATGATGTTACAACAGCACAGTGTACTGAGCGACGCAAAGAGAGAGCCAAGGCCAGGAAACAGCTAAAAGTAGTTATGAGCGAGTTAAAAGCAGGTCAAATGAAGGTCACCACAGGTTCTAATACTAAGGAGCGGGGTCTTCTTGGGTTACAGGAGGATGGAAACGAGGACGAGCTCATTGTCAAGGTGCCTGGAAGTGCCTATTCAGTAGCCATGGCTAAGAAAGTGGAGGAGCATCCTCGAAGGCCTCTTCTATGA 3804 0.438 MVLTEEQKKRAEANRLAAIERRKAVLEARGQKDPWQLFKCRKISSEPIAKPTPSVQPQSVSVEPVSPASLPHKFLVRLEICSPDSFSATPLPLRGSPYPGEEWCLRRLSGHLTNVMPSHYTQNNDGRNACVYNLRDYHAVLKCLKAVMDIEVEEIPQGTLKAVEAFSHFFATERWTPCRPEHLPDDKVDELIGTLPRALLDALLPFQRDGLRFGLRRGGRCLIADEMGLGKTLQAIAIAGCFLNEGSILVVCPAVLRFTWAEELERWLPCCLPADIHLVFGHRDNPAYLRRCPRIVVISYTMLHRLRKSMLGQEWALLIVDESHHVRCTRKTSEPGEIKAVLDVASTVKRIILLSGTPSLSRPYDIFHQINMLWPGLLGKDKYAFAKTYCDCKYIKGIHGKIFADFSKGIRLEELNVLLKQTVMIRRLKEHVLLQLPPKRRQIIRLLLKRSDVVAAKKAVGKLNGSTSKSDTDDMTLDSFDEPDGMLKRSDVVAAETAVGVSDTDIDTSESVNEDITLETLDESEGKLSYQELGIAKLSGFREWLSLHPVTAESESASKMIIFAHHHKVLDGVQELVCEKGISFVRIDGNTLARDRQSAVVSFRSRLEVKIAIVGILAAGFGVDFSAAQDVVFLELPQCPTLMLQLHWAQWMRQVTAFERRHRNGNMAEDRAHRRGQTNAVNVYIFCAKDTWDESHWKNLNRSLHRVSSTTDGKYDAMKEIQVEGVTYLDTLVKTNRSYEEQSASDETYEQVTTLLDFASVSNLQPSQANFKESEARLGDQADQQTCFVNNLADKVSSPESGGASILDVNLGVDLFDTKGRCSGIDMSKMDKSGRSNKQMVEFIQKNSGEDDNQVDENKQLSTIKADDYHPVQPIEAEENSSCAESLRFEVSPYTGRIHLYTCILGTDTRPRPLFKNFRPEELELLSSFSDDDKKKKEISVRGSPAFTNALLEFSNEWKKLRPIEQKKLLGKPLQLPLAVELCYLSETSSHNKKGLLNGGSKRRMTPLMEISHPLPSDAVWRKIYLRSGNGKKEKEYTQAWTLTDEPLCKLCQKTCMGNNAKTPEYFEDLFCNLVCYEEYRMRTSNKFLRQELFEVEHGVCSNCHLDCHKLVEHIRPLPGARRREYIEKVAPNVAGRKNMLEKLVKDPTEGNAWHADHIVPVYQGGGECRLENMRTLCVACHYDVTTAQCTERRKERAKARKQLKVVMSELKAGQMKVTTGSNTKERGLLGLQEDGNEDELIVKVPGSAYSVAMAKKVEEHPRRPLL 1267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g1487 1267 FunFam SNF2 DNA repair protein, putative 176 426 - -
Prci9g1487 1267 Pfam SNF2-related domain 221 451 IPR000330 GO:0005524|GO:0140658
Prci9g1487 1267 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 546 722 IPR001650 -
Prci9g1487 1267 Coils Coil 9 29 - -
Prci9g1487 1267 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 314 728 IPR027417 -
Prci9g1487 1267 Pfam Helicase conserved C-terminal domain 553 645 IPR001650 -
Prci9g1487 1267 Gene3D - 454 762 IPR027417 -
Prci9g1487 1267 Pfam HNH endonuclease 1151 1183 IPR002711 GO:0003676|GO:0004519|GO:0008270
Prci9g1487 1267 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 5 645 - -
Prci9g1487 1267 CDD SF2_C_SNF 536 687 - -
Prci9g1487 1267 SMART ultradead3 199 383 IPR014001 -
Prci9g1487 1267 Gene3D - 183 400 IPR038718 -
Prci9g1487 1267 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 212 376 IPR014001 -
Prci9g1487 1267 Gene3D - 1077 1211 - -
Prci9g1487 1267 CDD HNHc 1146 1186 IPR003615 -
Prci9g1487 1267 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 202 427 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g1487 Prci-Chr9 27928140 27942140 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g1487 537 729 RAD5 or RAD16-like Gene Family AT1G61140 28.780 3.96e-10 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Prci9g1487 SNF2_N 3.5e-23 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g1487 K25861 - pcin:129320183 2489.15