Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g1483 ATGGTTCTCACGGAAGAACAGAAAAAACGAGCCGAAGCAAACCGGTTGGCGGCAATTGAAAGACGGAAGGCAGTTTTAGAAGCTCGTGGACAGAAAGACCCTTGGCAGCTCTTCAAGTGCCGTAAGATCTCTTCCGAACCAATTGCGAAGCCCACACCTTCCGTTCAACCTCAGTCCGTCTCCGTGGAACCTGTTTCTCCCGCATCTCTGCCCCATAAGTTTTTGGTTAGGCTCGAAATATGCTCACCCGATTCCTTTTCTGCAACTCCTCTTCCCCTCCGGGGTTCCCCCTATCCCGGAGAAGAATGGTGCTTGCGGAGACTAAGTGGTCACTTGACCAATGTCATGCCTTCACACTACACCCAGAATAATGATGGCAGAAACGCCTGTGTGTATAACTTGAGGGATTACCATGCTGTCCTTAAGTGTTTGAAGGCTGTCATGGACATAGAAGTTGAAGAAATTCCGCAGGGAACTTTGAAAGCCGTTGAAGCGTTTTCACATTTCTTTGCTACGGAGCGCTGGACGCCCTGCAGGCCCGAGCATTTGCCTGATGACAAGGTTGATGAGTTAATTGGGACGCTACCAAGGGCTCTGTTGGATGCACTGTTGCCTTTCCAAAGGGATGGTTTAAGATTTGGATTGAGACGGGGTGGCCGGTGTCTTATTGCTGATGAGATGGGCCTTGGGAAAACGCTCCAGGCTATTGCTATTGCAGGATGCTTCTTGAATGAAGGTTCTATACTTGTTGTTTGTCCAGCTGTTTTGCGATTTACATGGGCAGAAGAATTAGAGCGGTGGCTTCCCTGTTGTTTGCCTGCTGATATCCATCTGGTCTTTGGCCATCGAGATAATCCTGCTTATTTAAGAAGATGCCCTAGAATTGTGGTTATTTCTTATACCATGCTCCATCGTTTGAGGAAAAGCATGCTTGGGCAAGAATGGGCCCTCTTGATTGTTGATGAATCTCATCATGTGCGATGTACGAGGAAGACCTCAGAACCAGGGGAGATAAAGGCTGTTCTTGATGTAGCTTCAACTGTCAAGCGCATAATACTGCTATCTGGGACACCTTCTTTGTCAAGGCCATATGACATATTTCATCAGATAAACATGTTATGGCCTGGACTGCTGGGCAAGGATAAATATGCATTTGCTAAAACTTATTGCGATTGTAAATATATCAAGGGAATCCATGGCAAAATTTTTGCGGATTTTTCAAAGGGCATTCGCTTGGAAGAGTTGAATGTGTTACTCAAGCAAACTGTTATGATAAGGCGTCTAAAGGAACATGTGCTGCTACAATTACCACCAAAACGGCGGCAAATTATACGGTTGCTGTTGAAGAGATCAGATGTAGTTGCTGCAAAAAAGGCAGTTGGAAAGTTGAATGGCAGTACTTCCAAAAGTGATACTGACGACATGACCTTGGACAGTTTTGATGAACCTGATGGGATGTTGAAGAGATCAGATGTAGTTGCTGCAGAAACAGCAGTTGGGGTGTCAGATACTGATATTGATACTTCTGAAAGTGTTAATGAAGACATAACTTTGGAAACTTTGGATGAATCTGAAGGGAAGCTTTCCTACCAGGAACTTGGAATTGCAAAGCTTTCTGGATTTCGTGAATGGCTTTCCCTCCATCCAGTCACTGCAGAGTCAGAAAGTGCTTCAAAAATGATAATTTTTGCTCATCACCACAAAGTTCTTGATGGAGTGCAGGAGTTAGTATGTGAGAAAGGAATTAGTTTTGTCCGAATTGATGGAAACACACTTGCTAGGGATAGGCAGTCAGCGGTGGTGTCATTTCGTTCAAGACTGGAGGTTAAAATTGCAATAGTAGGTATTTTAGCAGCAGGATTTGGAGTTGATTTCTCAGCAGCACAAGATGTCGTGTTCTTGGAGCTTCCACAATGCCCAACTCTGATGCTTCAGTTGCACTGGGCACAGTGGATGCGTCAGGTGACTGCATTTGAAAGGAGACACAGAAACGGGAACATGGCTGAGGATAGAGCTCATCGCCGAGGGCAAACAAATGCTGTCAATGTATATATATTTTGCGCAAAGGATACCTGGGATGAGTCACATTGGAAAAATTTGAACAGAAGTTTGCACCGAGTTTCATCGACAACAGATGGTAAATATGATGCAATGAAAGAGATACAGGTTGAAGGTGTTACTTACCTGGACACACTTGTCAAAACCAATAGAAGTTATGAAGAGCAATCTGCATCTGATGAAACTTATGAACAGGCTGACAAGGTTTCCAGCCCAGAATCAGGCGGGGCTTCTATTTTGGATGTAAATCTGGGTGTAGATCTTTTTGACACCAAGGGAAGATGCTCTGGTATTGACATGAGTAAGATGGACAAGAGTGGACGAAGCAACAAACAGATGGTAGAATTTATTCAGAAGAACAGTGGTGAAGATGATAATCAAGTAGACGAGAATAAACAATTATCAACAATAAAAGCAGATGACTACCATCCTGTTCAGCCAATTGAAGCTGAAGAAAATTCCTCTTGTGCTGAATCTCTACGATTTGAGGTGAGCCCGTACACTGGAAGGATCCACTTGTATACTTGCATTTTGGGTACAGACACAAGACCAAGACCGCTTTTTAAGAATTTCCGACCAGAGGAACTTGAGTTGCTCAGTTCCTTTTCTGATGATGATAAAAAGAAAAAGGAGATCTCTGTCAGGGGTAGTCCTGCTTTTACAAATGCTCTTTTGGAATTTTCAAATGAATGGAAGAAATTGAGGCCAATTGAGCAAAAGAAGTTACTGGGAAAGCCATTACAACTTCCTTTGGCTGTTGAACTGTGCTACTTGAGCGAAACTAGTAGCCACAACAAGAAGGGATTATTAAATGGTGGAAGTAAACGGCGTATGACACCTTTAATGGAAATAAGCCATCCTTTGCCATCAGATGCTGTTTGGAGAAAGATCTATCTGCGAAGTGGCAATGGTAAGAAGGAGAAAGAATACACTCAAGCTTGGACTCTGACAGATGAGCCACTCTGTAAGCTTTGTCAAAAGACGTGCATGGGTAACAATGCGAAGACACCTGAATATTTTGAAGATCTTTTCTGTAACCTTGTCTGCTATGAAGAATATCGTATGAGAACAAGCAATAAATTCCTTCGGCAGGAACTTTTTGAAGTTGAGCATGGTGTGTGCTCAAATTGCCATTTAGACTGTCATAAACTAGTTGAACATATAAGACCTTTGCCAGGAGCAAGACGTAGAGAGTACATTGAGAAAGTGGCACCAAATGTGGCTGGGCGAAAGAACATGCTTGAGAAGCTTGTCAAGGATCCAACTGAGGGCAATGCGTGGCATGCTGATCATATTGTTCCAGTATATCAAGGTGGAGGTGAATGTCGGCTAGAGAATATGAGGACTCTTTGTGTGGCCTGCCACTATGATGTTACAACAGCACAGTGTACTGAGCGACGCAAAGAGAGAGCCAAGGCCAGGAAACAGCTAAAAGTAGTTATGAGCGAGTTAAAAGCAGGTCAAATGAAGGTCACCACAGGTTCTAATACTAAGGAGCGGGGTCTTCTTGGGTTACAGGAGGATGGAAACGAGGACGAGCTCATTGTCAAGGTGCCTGGAAGTGCCTATTCAGTAGCCATGGCTAAGAAAGTGGAGGAGCATCCTCGAAGGCCTCTTCTATGA 3681 0.439 MVLTEEQKKRAEANRLAAIERRKAVLEARGQKDPWQLFKCRKISSEPIAKPTPSVQPQSVSVEPVSPASLPHKFLVRLEICSPDSFSATPLPLRGSPYPGEEWCLRRLSGHLTNVMPSHYTQNNDGRNACVYNLRDYHAVLKCLKAVMDIEVEEIPQGTLKAVEAFSHFFATERWTPCRPEHLPDDKVDELIGTLPRALLDALLPFQRDGLRFGLRRGGRCLIADEMGLGKTLQAIAIAGCFLNEGSILVVCPAVLRFTWAEELERWLPCCLPADIHLVFGHRDNPAYLRRCPRIVVISYTMLHRLRKSMLGQEWALLIVDESHHVRCTRKTSEPGEIKAVLDVASTVKRIILLSGTPSLSRPYDIFHQINMLWPGLLGKDKYAFAKTYCDCKYIKGIHGKIFADFSKGIRLEELNVLLKQTVMIRRLKEHVLLQLPPKRRQIIRLLLKRSDVVAAKKAVGKLNGSTSKSDTDDMTLDSFDEPDGMLKRSDVVAAETAVGVSDTDIDTSESVNEDITLETLDESEGKLSYQELGIAKLSGFREWLSLHPVTAESESASKMIIFAHHHKVLDGVQELVCEKGISFVRIDGNTLARDRQSAVVSFRSRLEVKIAIVGILAAGFGVDFSAAQDVVFLELPQCPTLMLQLHWAQWMRQVTAFERRHRNGNMAEDRAHRRGQTNAVNVYIFCAKDTWDESHWKNLNRSLHRVSSTTDGKYDAMKEIQVEGVTYLDTLVKTNRSYEEQSASDETYEQADKVSSPESGGASILDVNLGVDLFDTKGRCSGIDMSKMDKSGRSNKQMVEFIQKNSGEDDNQVDENKQLSTIKADDYHPVQPIEAEENSSCAESLRFEVSPYTGRIHLYTCILGTDTRPRPLFKNFRPEELELLSSFSDDDKKKKEISVRGSPAFTNALLEFSNEWKKLRPIEQKKLLGKPLQLPLAVELCYLSETSSHNKKGLLNGGSKRRMTPLMEISHPLPSDAVWRKIYLRSGNGKKEKEYTQAWTLTDEPLCKLCQKTCMGNNAKTPEYFEDLFCNLVCYEEYRMRTSNKFLRQELFEVEHGVCSNCHLDCHKLVEHIRPLPGARRREYIEKVAPNVAGRKNMLEKLVKDPTEGNAWHADHIVPVYQGGGECRLENMRTLCVACHYDVTTAQCTERRKERAKARKQLKVVMSELKAGQMKVTTGSNTKERGLLGLQEDGNEDELIVKVPGSAYSVAMAKKVEEHPRRPLL 1226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g1483 1226 CDD HNHc 1105 1145 IPR003615 -
Prci9g1483 1226 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 546 722 IPR001650 -
Prci9g1483 1226 Coils Coil 9 29 - -
Prci9g1483 1226 Gene3D - 1036 1170 - -
Prci9g1483 1226 Pfam HNH endonuclease 1110 1142 IPR002711 GO:0003676|GO:0004519|GO:0008270
Prci9g1483 1226 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 5 645 - -
Prci9g1483 1226 Gene3D - 183 400 IPR038718 -
Prci9g1483 1226 Gene3D - 453 759 IPR027417 -
Prci9g1483 1226 CDD SF2_C_SNF 536 687 - -
Prci9g1483 1226 Pfam Helicase conserved C-terminal domain 553 645 IPR001650 -
Prci9g1483 1226 SMART ultradead3 199 383 IPR014001 -
Prci9g1483 1226 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 202 427 IPR027417 -
Prci9g1483 1226 FunFam SNF2 DNA repair protein, putative 176 426 - -
Prci9g1483 1226 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 212 376 IPR014001 -
Prci9g1483 1226 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 314 728 IPR027417 -
Prci9g1483 1226 Pfam SNF2-related domain 221 451 IPR000330 GO:0005524|GO:0140658
Prci9g1483 1226 MobiDBLite consensus disorder prediction 739 762 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g1483 Prci-Chr9 27928140 27942140 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g1483 537 729 RAD5 or RAD16-like Gene Family AT1G61140 28.780 4.10e-10 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Prci9g1483 SNF2_N 3.3e-23 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g1483 K25861 - pcin:129320183 2389.76