Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g1468 ATGGAAGAAGAAGGTCGGCAAGTGCTGGAACATGTGTGTAAATTCTGCAGCAAGAGCTTCCCTTGCGGTAGATCATTAGGAGGTCACATGAGGTCGCACATCACCAATTTTTCAACTGAAGCAGAGGAGAAACCTGCGACGGTGAAGAAGATTCAATCTGTCATCAATGCCGGAGCTGGAAGCAGTAAGGTTGCGGAGTACGATCTCAGAGAGAATCCCAAAAAGACTTGGAGACTCGCAGATTCAAGAAGGGAAGAAACACCTCCGGTCACTGACGACAAATTCTGCAAAGAGTGTGGCAAAGCGTTTCACTCTTGGAAAGCTCTTTTTGGTCACATGAAATGCCATTCCGAGAAATCTTCCATTAACAACAACAACAACAACTTGGAGAATCAAGATTCTGCTAGCCAGAAAGTTGTCACAGATAGCCAATCAGACAACGAGGGCGCTGGCAATCCTAACCGAAGAAGAAGATCCAAGAGAAGAACGAGGTTCGTTGCCGCTGCTTCAACTTCCTCTCTATCTTTTGCGAATCCTTCGTCCTCTGTTTCTGAGGTTGAACAAGAGCAAGAAGAGGTTGCTATGAGCTTGATGATGCTAAGCAGGGACGTGGGTCAGTGGAGCGGTTTGAATCCTCTTTTCGACTCCTCCGATAACAATTCGGCATTTTTCGAAGCTCGATCTTCAGTGGTTCGAACTAATCTGAGTACCAAAATTGAAACGGGTAAAGTAAAACTGACTATTGGCAGCAACTCTGATTCTGCGGATTTCAACCCGAAAGGAAAAAAACCAGAGAGTTTAGCAAGTAGCTCTCCGTTGAATGGGTTCAAATCGATCAAAGCCACAGTTTCCATTAATGGGTTGGTCAAGAACTGTAAAGAAAAGAAGCAGGAGCTTGATAACCAGTTGACATTGGAGGATTCTGAAGACGAACAGCGGAAGAGCGAGGCCAATGGAACAGAACTAGATTCATCAGTGAAGAGAAGGTTTTCGGATTATGAGGTGAAGTCGAATTGCAAGAAAGGGAAGTTCAAGTGTACAACTTGCAACAAGATCTTCCACTCGTACCAAGCTCTGGGAGGCCACAGATCTAGTCATAAGAAGCTCAAAGGCTGCTCTGCTTCGAGAAACGAGAGTAGCGAGAACAGCATAGAAACAGACCTCAACAATGGGTATGTAGTTCAAAATCAAGAGCTTATGGCTTGTGTCAATTTGGAGAATGAAGAAGAGGTAGTCACAGAACCCAAGAAGAACAAAGTACATGAGTGTCCAATTTGCCTGAAGATTTTTCCATCTGGCCAAGCTTTGGGAGGTCACAAGAGATCTCATTTCGCAGCTGAAGGGTCACTAGTACTAGAGAAACCAGTTCAGGGAATCAGAGACTTTCTTGATCTCAATCTTCCTGCTTCTACAGAAGAAGAAAGCAACAGTCGAGTGGAGAATTACCAGCCATGGTGGGTGGTACAAGGCCATCATCATCCCAAGCAGGAGGCACTGGTTGGCCTCATATCTAACTGA 1518 0.4513 MEEEGRQVLEHVCKFCSKSFPCGRSLGGHMRSHITNFSTEAEEKPATVKKIQSVINAGAGSSKVAEYDLRENPKKTWRLADSRREETPPVTDDKFCKECGKAFHSWKALFGHMKCHSEKSSINNNNNNLENQDSASQKVVTDSQSDNEGAGNPNRRRRSKRRTRFVAAASTSSLSFANPSSSVSEVEQEQEEVAMSLMMLSRDVGQWSGLNPLFDSSDNNSAFFEARSSVVRTNLSTKIETGKVKLTIGSNSDSADFNPKGKKPESLASSSPLNGFKSIKATVSINGLVKNCKEKKQELDNQLTLEDSEDEQRKSEANGTELDSSVKRRFSDYEVKSNCKKGKFKCTTCNKIFHSYQALGGHRSSHKKLKGCSASRNESSENSIETDLNNGYVVQNQELMACVNLENEEEVVTEPKKNKVHECPICLKIFPSGQALGGHKRSHFAAEGSLVLEKPVQGIRDFLDLNLPASTEEESNSRVENYQPWWVVQGHHHPKQEALVGLISN 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g1468 505 ProSitePatterns Zinc finger C2H2 type domain signature. 96 116 IPR013087 -
Prci9g1468 505 SUPERFAMILY beta-beta-alpha zinc fingers 11 116 IPR036236 -
Prci9g1468 505 ProSitePatterns Zinc finger C2H2 type domain signature. 13 33 IPR013087 -
Prci9g1468 505 SMART c2h2final6 344 366 IPR013087 -
Prci9g1468 505 SMART c2h2final6 94 116 IPR013087 -
Prci9g1468 505 SMART c2h2final6 421 443 IPR013087 -
Prci9g1468 505 SMART c2h2final6 11 33 IPR013087 -
Prci9g1468 505 SUPERFAMILY beta-beta-alpha zinc fingers 344 443 IPR036236 -
Prci9g1468 505 ProSitePatterns Zinc finger C2H2 type domain signature. 423 443 IPR013087 -
Prci9g1468 505 MobiDBLite consensus disorder prediction 248 271 - -
Prci9g1468 505 ProSitePatterns Zinc finger C2H2 type domain signature. 346 366 IPR013087 -
Prci9g1468 505 ProSiteProfiles Zinc finger C2H2 type domain profile. 94 121 IPR013087 -
Prci9g1468 505 Gene3D Classic Zinc Finger 9 116 - -
Prci9g1468 505 ProSiteProfiles Zinc finger C2H2 type domain profile. 344 371 IPR013087 -
Prci9g1468 505 MobiDBLite consensus disorder prediction 300 323 - -
Prci9g1468 505 MobiDBLite consensus disorder prediction 122 164 - -
Prci9g1468 505 ProSiteProfiles Zinc finger C2H2 type domain profile. 421 448 IPR013087 -
Prci9g1468 505 ProSiteProfiles Zinc finger C2H2 type domain profile. 11 33 IPR013087 -
Prci9g1468 505 Coils Coil 289 309 - -
Prci9g1468 505 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 486 - -
Prci9g1468 505 MobiDBLite consensus disorder prediction 122 150 - -
Prci9g1468 505 Pfam C2H2-type zinc finger 420 443 - -
Prci9g1468 505 Pfam C2H2-type zinc finger 96 118 - -
Prci9g1468 505 Pfam C2H2-type zinc finger 344 368 - -
Prci9g1468 505 Pfam C2H2-type zinc finger 11 33 - -
Prci9g1468 505 Gene3D Classic Zinc Finger 341 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g1468 Prci-Chr9 27885724 27888229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g1468 12 473 C2H2 Transcription Factor Family AT1G26610 34.122 1.11e-58 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci9g1468 zf-C2H2_6 7.2e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g1468 - - gmx:102669916 497.278