Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g1445 ATGGTTAAATCAGTTACCTCAGATGCGATTTCGATATTGCTTGCAAATCCCTCTCCAGATTCTTCATCGGAGCTTCCTGAGATCGTCGTCCAAGTTCTGGATCTCAAGCAAAGCGGTAATAGATTCATGTTCACTGCTAACGATGGGAAGATGAAGTTAAGGGCAATTCTTCCTTCTAATCAGAATTCCCAGGTCATTTCGGGAAATATTCAGAGCCTGGGTCTTATCCGGATAGATGATTATACTCTCAATGATATCCCAAACAAGTCAGAGAAATATCTTATTGTCACAAAATGTGAATCGGTCTCTCCTGCACTTGAAATGGAAATTAAAACAGAAGTCAAGAGCGAGTGCCCCGTTACGCTTTTGAATCCAAAGCAAGAGGGTGAAATCAAAAGCGAGGTGAAAAGCGAAGGTGCTGGCATTATTTTGAGACCAAAGCAAGAAACAGTGTCCAAATCTGCCGCTCAGATTGTTCACGAACAACATACAAACATTGCCCCTACTGCACGGATGGCCATGACACGCAGGGTGCGCCCTCTTGTTTCCTTAAATCCTTATCAGGGTAATTGGACGATAAAGGTTCGTGTAACAAGCAAAGGCAACATGCGTTCCTACAAGAATGCAAGAGGGGAAGGTTGTGTCTTCAACGTGGAATTGACAGATGAAGATGGAACCCAAATTCAAGCAACAATGTTTAATGAGGCTGCCAGGAAATTTTATGACAGATTTGCGCTTGGGAAGGTTTATTACATTTCCAAGGGAACTTTAAAGGTTGCTAACAAACAGTTCAAAACCGTCCAAAATGATTATGAGATGACATTGAATGAGAACTCTGAGGTGGAAGAGGCCGCCAATGAAGAAAGTTTTGTACCAGAAACAAAATTTAACTTTGTCCTGATTGATCAGCTGGGTCCTTTTGTCAACAGGAGTGACCTTGTTGATGTCATAGGAATTGTTCAAAATGTGTCTTCCACCATGAGCATTCGAAGGAAGAGTAACAACGAGAGTATTTCAAAGCGTGATATTACCATTGCTGATGAAACAAAGAAGACAGTGGTAGTGTCTTTGTGGAGTGAACTTGCAACTAATATAGGGCAAGAATTACTGGATACTGCTGATAAATCTCCAGTAGTTGCAATCAAGTCCCTCAGGGTTGGGGATTTTCAGGGCATTTCCTTGTCAACTATAAGCAAAAGTGTAGTTCTGATAAATCCTGATATACCTGAAGCAAACAAGCTTAGATGCTGGTACGAGTCTGAAGGTAAAGATGCTCCAATGGCTTCCATTGGCTCGGGCGCATCTGCAACCAAAAATGGAATTAGATCAGTGTACTCTGACCGTATTTCACTAGCTCAAATAACCTCGAATAAATCCTTGGGGGAGGAAAAGCCTGCCCTTTTCAGTGTCAGGGCACATATAAGCTCTATTAGGCCTGATCAGACAATGTGGTATAGGGCTTGTACAACATGCAACAAGAAAGCCACTGAAGCCATTGGGTCTGGTTATTGGTGTGAAGGCTGCCAGAAAAATGTAGAAAGCACTTTAAGGTATATTTTGGTTGCACGAGTTTCTGATGCTAGTGGTGAAGCTTATGTCTCAATGTTCAATAATGAAGCTGAGGCAATTGTTGGTTGTTCTGCTAATGAGCTAGATAGCCTAAAATCACAGGAGGGAGAAGATAATCCATATCAAATGAAATTGAAACGAGCGACTTGGACCCCTCATCTGTTCCGGGTTAGTGTTTCTCAGAACGAGTATATGAACGAGAAGAGGCAGAGGATAACCGTCCGAGCAGTTGCTCCTGTTGATTATGCTGCAGAGTCAAGGATTCTCCTGGAAGAGATTTCAAAGATGAGCGCTTCATAA 1869 0.4227 MVKSVTSDAISILLANPSPDSSSELPEIVVQVLDLKQSGNRFMFTANDGKMKLRAILPSNQNSQVISGNIQSLGLIRIDDYTLNDIPNKSEKYLIVTKCESVSPALEMEIKTEVKSECPVTLLNPKQEGEIKSEVKSEGAGIILRPKQETVSKSAAQIVHEQHTNIAPTARMAMTRRVRPLVSLNPYQGNWTIKVRVTSKGNMRSYKNARGEGCVFNVELTDEDGTQIQATMFNEAARKFYDRFALGKVYYISKGTLKVANKQFKTVQNDYEMTLNENSEVEEAANEESFVPETKFNFVLIDQLGPFVNRSDLVDVIGIVQNVSSTMSIRRKSNNESISKRDITIADETKKTVVVSLWSELATNIGQELLDTADKSPVVAIKSLRVGDFQGISLSTISKSVVLINPDIPEANKLRCWYESEGKDAPMASIGSGASATKNGIRSVYSDRISLAQITSNKSLGEEKPALFSVRAHISSIRPDQTMWYRACTTCNKKATEAIGSGYWCEGCQKNVESTLRYILVARVSDASGEAYVSMFNNEAEAIVGCSANELDSLKSQEGEDNPYQMKLKRATWTPHLFRVSVSQNEYMNEKRQRITVRAVAPVDYAAESRILLEEISKMSAS 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g1445 622 CDD RPA1_DBD_A 180 283 - -
Prci9g1445 622 SUPERFAMILY Nucleic acid-binding proteins 446 619 IPR012340 -
Prci9g1445 622 CDD RPA1_DBD_B 313 419 - -
Prci9g1445 622 Gene3D - 431 619 IPR012340 -
Prci9g1445 622 Pfam Replication factor-A C terminal domain 468 611 IPR013955 -
Prci9g1445 622 Pfam Replication factor-A protein 1, N-terminal domain 5 103 IPR007199 GO:0003677|GO:0005634|GO:0006260
Prci9g1445 622 CDD RPA1_DBD_C 451 618 IPR047192 -
Prci9g1445 622 Gene3D - 177 286 IPR012340 -
Prci9g1445 622 FunFam Replication protein A subunit 433 619 - -
Prci9g1445 622 SUPERFAMILY Nucleic acid-binding proteins 1 108 IPR012340 -
Prci9g1445 622 Gene3D - 4 112 IPR012340 -
Prci9g1445 622 Pfam Replication protein A OB domain 309 405 IPR031657 -
Prci9g1445 622 Gene3D - 291 430 IPR012340 -
Prci9g1445 622 NCBIfam replication factor-a protein 1 (rpa1) 3 618 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Prci9g1445 622 Pfam OB-fold nucleic acid binding domain 191 277 IPR004365 GO:0003676
Prci9g1445 622 PANTHER REPLICATION FACTOR A 1, RFA1 191 582 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Prci9g1445 622 FunFam Replication protein A subunit 177 286 - -
Prci9g1445 622 SUPERFAMILY Nucleic acid-binding proteins 296 424 IPR012340 -
Prci9g1445 622 FunFam Replication protein A subunit 290 429 - -
Prci9g1445 622 SUPERFAMILY Nucleic acid-binding proteins 179 287 IPR012340 -
Prci9g1445 622 FunFam Replication protein A subunit 4 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g1445 Prci-Chr9 27707515 27711102 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g1445 1 618 Core DNA Replication Machinery Family AT5G08020 67.472 0.0 879
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g1445 K07466 - qsa:O6P43_002222 978.393