Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g1427 ATGGGAAGGGGGAAAGTTGAACTCAAGAGAATAGAGAACAAAATCAATAGGCAGGTCACATTTGCCAAGAGAAGAAATGGGCTGCTCAAGAAGGCTTATGAACTCTCTGTCCTCTGTGATGCTGAGGTTGCGCTTATCATCTTCTCCAATCGTGGCAAGCTCTATGAGTTCAGCAGTGGCTCCAGCATGATGAACACACTGGAGAAGTACCAGAAGAACAGCTATGGTGCACTAGAGTCAAGCCAGCAAATGAATCACACTCAGCAGAGTAGCTACCAGGAATACTTGAGACTTAAAGCAAGGGTTGAAGTCCTGCAACGTTCACAGAGGAACCTTCTTGGGGAAGATCTGGCCCAAATGAATACAAAGGAACTAGAACAGCTTGAGAATCAAGTTGAGGCAGCACTGAAGAACATCAGGTCCACAAAGACTCAGTATATGCTCGACCAGCTTGCGGATCTTCAGAACCGGGAGAAAGTGCTGGAGGAAACTAACAGAGCTTTGAGGAGTAAGTTAGTAGAAGGAAGCGAGTCGCAAGTTCCTCTCAGAATGGGTTGGGAAGGTGCAGGAGGGTCTGAGACGATCCATTGCACTCGCTTTTCTGCTCAATCTGAAGCATTTTTTCAGCCTTTGGGAGTCAATCCCAATTTGCAAATCGGATATAATCAGGTGGGAGGAGAGGATGTACATGTTGGATGCGCAGCATTGAATCTTCATGGATTCGTGCCTGGGTGGATGCTTTAA 744 0.4664 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFSSGSSMMNTLEKYQKNSYGALESSQQMNHTQQSSYQEYLRLKARVEVLQRSQRNLLGEDLAQMNTKELEQLENQVEAALKNIRSTKTQYMLDQLADLQNREKVLEETNRALRSKLVEGSESQVPLRMGWEGAGGSETIHCTRFSAQSEAFFQPLGVNPNLQIGYNQVGGEDVHVGCAALNLHGFVPGWML 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g1427 247 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci9g1427 247 FunFam MADS-box transcription factor 1 13 88 - -
Prci9g1427 247 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Prci9g1427 247 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci9g1427 247 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Prci9g1427 247 Pfam K-box region 85 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci9g1427 247 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 162 - -
Prci9g1427 247 Gene3D - 13 87 IPR036879 GO:0003677|GO:0046983
Prci9g1427 247 Coils Coil 151 171 - -
Prci9g1427 247 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci9g1427 247 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci9g1427 247 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci9g1427 247 Coils Coil 118 145 - -
Prci9g1427 247 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Prci9g1427 247 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
Prci9g1427 247 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g1427 Prci-Chr9 27542683 27547119 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g1427 1 247 MADS-box Gene Family AT5G15800 57.414 1.14e-91 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci9g1427 K-box 1.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g1427 K09264 - gmx:100797819 350.132