Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g1426 ATGGGAAGGGGGAAAGTTGAACTCAAGAGAATAGAGAACAAAATCAATAGGCAGGTCACATTTGCCAAGAGAAGAAATGGGCTGCTCAAGAAGGCTTATGAACTCTCTGTCCTCTGTGATGCTGAGGTTGCGCTTATCATCTTCTCCAATCGTGGCAAGCTCTATGAGTTCAGCAGTGGCTCCAGCATGATGAACACACTGGAGAAGTACCAGAAGAACAGCTATGGTGCACTAGAGTCAAGCCAGCAAATGAATCACACTCAGAGTAGCTACCAGGAATACTTGAGACTTAAAGCAAGGGTTGAAGTCCTGCAACGTTCACAGAGGAACCTTCTTGGGGAAGATCTGGCCCAAATGAATACAAAGGAACTAGAACAGCTTGAGAATCAAGTTGAGGCAGCACTGAAGAACATCAGGTCCACAAAGACTCAGTATATGCTCGACCAGCTTGCGGATCTTCAGAACCGGGAGAAAGTGCTGGAGGAAACTAACAGAGCTTTGAGGAGTAAGTTAGTAGAAGGAAGCGAGTCGCAAGTTCCTCTCAGAATGGGTTGGGAAGGTGCAGGAGGGTCTGAGACGATCCATTGCACTCGCTTTTCTGCTCAATCTGAAGCATTTTTTCAGCCTTTGGGAGTCAATCCCAATTTGCAAATCGGATATAATCAGGTGGGAGGAGAGGATGTACATGTTGGATGCGCAGCATTGAATCTTCATGGATTCGTGCCTGGGTGGATGCTTTAA 741 0.4656 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFSSGSSMMNTLEKYQKNSYGALESSQQMNHTQSSYQEYLRLKARVEVLQRSQRNLLGEDLAQMNTKELEQLENQVEAALKNIRSTKTQYMLDQLADLQNREKVLEETNRALRSKLVEGSESQVPLRMGWEGAGGSETIHCTRFSAQSEAFFQPLGVNPNLQIGYNQVGGEDVHVGCAALNLHGFVPGWML 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g1426 246 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci9g1426 246 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 161 - -
Prci9g1426 246 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Prci9g1426 246 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci9g1426 246 Pfam K-box region 82 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci9g1426 246 Gene3D - 13 87 IPR036879 GO:0003677|GO:0046983
Prci9g1426 246 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Prci9g1426 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Prci9g1426 246 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
Prci9g1426 246 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci9g1426 246 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci9g1426 246 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci9g1426 246 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Prci9g1426 246 Coils Coil 150 170 - -
Prci9g1426 246 FunFam MADS-box transcription factor 1 13 89 - -
Prci9g1426 246 Coils Coil 117 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g1426 Prci-Chr9 27542683 27547119 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g1426 1 246 MADS-box Gene Family AT5G15800 57.414 5.90e-91 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci9g1426 K-box 9.1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g1426 K09264 - gmx:100797819 350.517