Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g1425 ATGGGGAGGGGAAGAGTACAGTTGAAGAGGATCGAGAACAAGATCAACAGGCAAGTGACTTTCTCGAAGAGAAGGTCTGGTTTGCAGAAGAAAGCCCACGAGATCTCTGTCCTTTGCGATGCCGAGGTTGCTCTCATCGTCTTCTCCACCAAGGGCAAGCTCTCTCACTACTCCAGCGACCCCTGCATGGAAAAAATTCTTGAACGCTATGAGAGGTATTCATATGCAGAAAAGCAGCTAGTTGCACCTGATCGTTCACCAACTGAAAACTGGACTTTAGAGCACGCAAAGCTTAAGGCTAGGATGGAGGTCCTGCAAAGAAATCTAAAGCATTATAAGGGAGAAGATCTGGAAGGCCTGAGTCTCAAGGAGCTCCAGAATGTGGAGCATCAGCTAGATAATGCTCTCAAACATATCAGAACACGCAAGAACCAACTCATGTATGAATCAATTTCAGAGTACCAGAAAAAGGATAAGAAACTCCAGGAACAAAACAACTTGCTGGCTAAGAAGATAAAGGAGAAAGAGAAGGCCATGTTGGAACAGGCACGTGAGGAAAAGGACGATCACGAGCACAATGATATCCTCGTACCCTCAAACATTGGAGGATCCCTAGAAGCAAGTGGTGGTGGAGGACATAAAGAAGGAACGATGGCTCAGGACCAGGACCAGGCTGTAGCTAGCCCGTTGCTTCCCTCGTGGATGCTTCCGCCCATCAGTGATTGA 726 0.4738 MGRGRVQLKRIENKINRQVTFSKRRSGLQKKAHEISVLCDAEVALIVFSTKGKLSHYSSDPCMEKILERYERYSYAEKQLVAPDRSPTENWTLEHAKLKARMEVLQRNLKHYKGEDLEGLSLKELQNVEHQLDNALKHIRTRKNQLMYESISEYQKKDKKLQEQNNLLAKKIKEKEKAMLEQAREEKDDHEHNDILVPSNIGGSLEASGGGGHKEGTMAQDQDQAVASPLLPSWMLPPISD 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g1425 241 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Prci9g1425 241 Coils Coil 122 145 - -
Prci9g1425 241 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Prci9g1425 241 Coils Coil 88 115 - -
Prci9g1425 241 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Prci9g1425 241 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci9g1425 241 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Prci9g1425 241 Pfam K-box region 88 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci9g1425 241 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Prci9g1425 241 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 166 - -
Prci9g1425 241 MobiDBLite consensus disorder prediction 179 241 - -
Prci9g1425 241 Coils Coil 151 193 - -
Prci9g1425 241 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Prci9g1425 241 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci9g1425 241 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci9g1425 241 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci9g1425 241 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Prci9g1425 241 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci9g1425 241 MobiDBLite consensus disorder prediction 179 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g1425 Prci-Chr9 27522106 27527284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g1425 1 179 MADS-box Gene Family AT1G26310 67.403 7.75e-86 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci9g1425 K-box 9.4e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g1425 K09264 - gmx:100784742 316.62