Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g1417 ATGACTATGTCGTTTGTTCCGATATCCCCCAATAAACGACTCAAAACCCAAGGCCAGGAGGACTCCGATCATGACCTCCACCCGCCACCTTCCTTCGAGGATAACCAACCTGATTCTTGTGGAATTTGCTACGCCGACCATGGCACTTCAATCAGAGGTCAAATTGATTGTTGCAATCACTTTTTTTGCTTCGTCTGCATCATGGAATGGTCCAAGCACGAGTCTCGATGCCCCCTCTGTCGACAAAGATTCTCCACCGTTCGCCGCCCACCTAAGCCCGGCGTCTTCCCTTCCTCGCGCCTCGTTAAAGTCCCTATTCGCGACCAGGTTTACCATGTTCATGGAAATATCACAACAGGTCCCGCGGATCCTTATGCCGAAACTCGGTGTAGTGTCTGTAATGGTAGGGAAGATGAAAGTTTTCTTCTCCTATGTGATCTATGTGATACTGCTTCTCATACATACTGTGTTGGCCTTGGACATGTTGTGCCTGAAGGTGATTGGTTTTGCCATGATTGTATTGTTTCCAAGGCGATTAATGGCGATAATGATGTAGATCATCAATGTGATACGCCGACAGCTGAGCCAAGTGTAAAAATCCTTGATATTGTGAAAGAACCAATCAGCCAGATGGTCCGAAGACCAAGATCATCGCCTCTTGTTACCCCTTTATCTGATAGGGTGAATAGAAAGAAAGATAGAAATCCTGACACAAGTGCTCGGACATTGGACCAATGTCGCAATGTGCAACGTAATATAAGAGCTTTGCGTGAAAATTGGAATGCTTTGAGAAATGGCTCATTAAGGTTTCCTTTCAATTCAACTGAATTTAGTGCTAGGCATGATCGAAAACAGGGCTCTGATTCCTTAGCTCATAGAAAATCAGATGAACCACATTCTTCGGCTTCCACAAGCCTTCATCAATCTACAATTCAAAGCATACCTTCTAGTAGCAAATCGAATGAGAGAGGCTTGAAAGATGTTGAAAAGGCTTGGAAAATGCTGGATAGAGCAAAGATGATGGAAAAGACTAAACAAAAAAGCAGCATTCTTCCACAGGGATTGGATCGTCTTTCAAGAGATGTAGGACATGGAAAAGCACAGAGCATTTATTGCAATGACCAAGAATTGAAGATTCAACAATCTAGAAGATCCTCAGGGAAGGAGAAGCAATACGGCTTTTCTAGTTTTAGTAAGGATATGGATAATCACCAGCCTCTAGAGTTGGGACATCAAAAGCATAGGGTTGCATATAAGGAGTCTTCACCGAATATTTGGGACCAAGCTTCTCATTTAGAAGGATGCTATGAACCTTCATTGCCCAGAAAAGTGCAAAGTAGCATTCAAGGTGCTCCCCCTCATGAAAATGGGAAGAGAAATTTCACCAAGGAACAAAGAAGGTCTTCTTGTTTAGTAACTTCGGCAGGTTCTGCTCCTTGTGATGGCAAGAGTGGTAGAGTGTCTTCCTCAAGCAGGGAGGCGGGTAAAAGAAAGTGGTTGTCTAAAAGTTTCAGGGATACAAACACAAGAGATAGTGAAGATTCTAAGAACGAGATCAAGTCTCTTGTCAAGCTCAATCTGAAGGTCCTTAGTAAAGATAAACCGTTAGGTGTTGATGTATTCAAGGAAATTGCTAGGCAGTCAACACACGCTATATTGGCTGTATGTCGATCGGAGCATGAAAAGCCGAGCACAAGCTCCTCAAACTCTGTATGCAGTCACGAGGGCGAGAATCAGCATTTTCCCAAGTCCACCTTGATGCCCAATTGTTGCCGACAATGTTTTTACACGTTTGTGAAGAATGTGGTCAACTCCACTATGATGGAGAAGCTGGGTGGTGGTGGGTAG 1848 0.4394 MTMSFVPISPNKRLKTQGQEDSDHDLHPPPSFEDNQPDSCGICYADHGTSIRGQIDCCNHFFCFVCIMEWSKHESRCPLCRQRFSTVRRPPKPGVFPSSRLVKVPIRDQVYHVHGNITTGPADPYAETRCSVCNGREDESFLLLCDLCDTASHTYCVGLGHVVPEGDWFCHDCIVSKAINGDNDVDHQCDTPTAEPSVKILDIVKEPISQMVRRPRSSPLVTPLSDRVNRKKDRNPDTSARTLDQCRNVQRNIRALRENWNALRNGSLRFPFNSTEFSARHDRKQGSDSLAHRKSDEPHSSASTSLHQSTIQSIPSSSKSNERGLKDVEKAWKMLDRAKMMEKTKQKSSILPQGLDRLSRDVGHGKAQSIYCNDQELKIQQSRRSSGKEKQYGFSSFSKDMDNHQPLELGHQKHRVAYKESSPNIWDQASHLEGCYEPSLPRKVQSSIQGAPPHENGKRNFTKEQRRSSCLVTSAGSAPCDGKSGRVSSSSREAGKRKWLSKSFRDTNTRDSEDSKNEIKSLVKLNLKVLSKDKPLGVDVFKEIARQSTHAILAVCRSEHEKPSTSSSNSVCSHEGENQHFPKSTLMPNCCRQCFYTFVKNVVNSTMMEKLGGGG 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g1417 615 CDD RING-HC_Topors 37 84 - -
Prci9g1417 615 MobiDBLite consensus disorder prediction 1 15 - -
Prci9g1417 615 MobiDBLite consensus disorder prediction 212 244 - -
Prci9g1417 615 MobiDBLite consensus disorder prediction 301 321 - -
Prci9g1417 615 Pfam PHD-finger 129 174 IPR019787 -
Prci9g1417 615 MobiDBLite consensus disorder prediction 1 34 - -
Prci9g1417 615 Coils Coil 239 259 - -
Prci9g1417 615 MobiDBLite consensus disorder prediction 16 31 - -
Prci9g1417 615 SMART ring_2 40 80 IPR001841 -
Prci9g1417 615 MobiDBLite consensus disorder prediction 278 325 - -
Prci9g1417 615 MobiDBLite consensus disorder prediction 378 405 - -
Prci9g1417 615 ProSiteProfiles Zinc finger PHD-type profile. 127 176 IPR019787 -
Prci9g1417 615 MobiDBLite consensus disorder prediction 490 516 - -
Prci9g1417 615 SUPERFAMILY FYVE/PHD zinc finger 121 177 IPR011011 -
Prci9g1417 615 Pfam Ring finger domain 38 81 IPR001841 -
Prci9g1417 615 PANTHER F18C1.6 PROTEIN 33 610 - -
Prci9g1417 615 SUPERFAMILY RING/U-box 39 95 - -
Prci9g1417 615 SMART PHD_3 129 174 IPR001965 -
Prci9g1417 615 MobiDBLite consensus disorder prediction 226 240 - -
Prci9g1417 615 MobiDBLite consensus disorder prediction 440 516 - -
Prci9g1417 615 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 179 IPR013083 -
Prci9g1417 615 ProSiteProfiles Zinc finger RING-type profile. 40 81 IPR001841 -
Prci9g1417 615 MobiDBLite consensus disorder prediction 278 300 - -
Prci9g1417 615 ProSitePatterns Zinc finger RING-type signature. 58 67 IPR017907 -
Prci9g1417 615 MobiDBLite consensus disorder prediction 378 402 - -
Prci9g1417 615 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 89 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g1417 Prci-Chr9 27447659 27450311 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g1417 106 177 C2H2 Transcription Factor Family AT3G01460 31.507 7.15e-10 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Prci9g1417 PHD 1.3e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g1417 - - pcin:129296896 1247.65