Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g1407 ATGCTGAAAATGGACTGTCATGGTGGCTACTCCAGTAACTGGGTACGCCTCTGTGACTCTTGCAGAGTGTCTGCTTCGACTCTGTACTGTCACACCGATTCAGCGTACCTCTGCTCTTCCTGCGACGGACAAATTCATTCGCCGAGATATCCTTGTTGGCCCCACCATCGGGTGCAACTTTGCGGAGCGTGTGAGAACGCTCCGGTGGCCTTCACCTGCAAGGCCGATGATGCTTCGCTGTGCGTCAACTGTGACTTCGAAATTCACTCGGCGAATCCAATCGCTAGCCGACACAACAGGGTCCCTGTGTCTCCCCTGTCTCGTATACCGAACGACAACGTGGCAACTCCTGAAGACCAGCCTAATTACGAGGTTGTCGACAACAGCGTAAGTAGCAAGGAAATGGACGAGCGAGAAGCTGACTCATGGTTATTGCTTGATTCTGCTGACACAATAGACAGCCAGGTTGATGACGGGTTTATGTTCGGAGAATCAGAGGATGATCACCATGCTTACATGGGGCTTGTTGAAGAGTGCGATTCATCCATAAAGTTAAAAAATTTCCAGGAAGATCGTGATCAGGAGCAGCAAGCTATGACCTTTTCTGAAGAGATGAACGAAAGTGACAGTGTGGTGCCAGTTCAGACCAAGCAATTGCAGCCAAAGCAGCAGCAGAATATGTACTTCAACATGGAGAAGAAGCCATCAAGAGTGGCTTTCACAAATTATGCCTTGAATTGCCGGAGCGTGGCGGTTCCATATATGGATGCTCCAGTGCTGCAAAGAGGAACGGCAAGTGACATGGCAGGCTACAGATTTGGCAAAGGAACAGAGATATTCCCGAGTGGATCAGTTCCAATGCAGATCCACTTTGGGCAGATGAACAGGAAAGCTGGAGTGGAAAAATACAGGGAGAAGAAGAAATCTAGAAAGTTCGAGAAGAGAATCAGATATGCTTACAGGAAGGCCTACGCCGAGAAGCGACCCAGAGTGAAGGGCAGATTTGTAAAGAGGCAAGAGTTAACCTCAGACGAAGGCGTGCCTCTCCATTGA 1053 0.4929 MLKMDCHGGYSSNWVRLCDSCRVSASTLYCHTDSAYLCSSCDGQIHSPRYPCWPHHRVQLCGACENAPVAFTCKADDASLCVNCDFEIHSANPIASRHNRVPVSPLSRIPNDNVATPEDQPNYEVVDNSVSSKEMDEREADSWLLLDSADTIDSQVDDGFMFGESEDDHHAYMGLVEECDSSIKLKNFQEDRDQEQQAMTFSEEMNESDSVVPVQTKQLQPKQQQNMYFNMEKKPSRVAFTNYALNCRSVAVPYMDAPVLQRGTASDMAGYRFGKGTEIFPSGSVPMQIHFGQMNRKAGVEKYREKKKSRKFEKRIRYAYRKAYAEKRPRVKGRFVKRQELTSDEGVPLH 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g1407 350 CDD Bbox1_BBX-like 17 60 - -
Prci9g1407 350 ProSiteProfiles Zinc finger B-box type profile. 56 103 IPR000315 GO:0008270
Prci9g1407 350 ProSiteProfiles CCT domain profile. 296 338 IPR010402 GO:0005515
Prci9g1407 350 Pfam B-box zinc finger 58 103 IPR000315 GO:0008270
Prci9g1407 350 ProSiteProfiles Zinc finger B-box type profile. 13 60 IPR000315 GO:0008270
Prci9g1407 350 Pfam CCT motif 296 338 IPR010402 GO:0005515
Prci9g1407 350 SMART bboxneu5 13 52 IPR000315 GO:0008270
Prci9g1407 350 SMART bboxneu5 56 103 IPR000315 GO:0008270
Prci9g1407 350 CDD Bbox1_BBX-like 60 103 - -
Prci9g1407 350 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 18 340 IPR045281 GO:0009909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g1407 Prci-Chr9 27390220 27392550 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g1407 11 338 C2C2-CO-like Transcription Factor Family AT3G02380 43.068 1.29e-69 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Prci9g1407 zf-B_box 7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g1407 - K12135 pcin:129321006 700.664